Re: [Freesurfer] Problem running recon-all

. But > the installer should notify you if it fails and why that is. > > > > On 4/23/24 09:21, Gregory Book (gregory.a.b...@gmail.com) wrote: > > External Email - Use Caution > I recently installed freesurfer 7.4.1 on a Debian 12 system (using the > Ubuntu 22

Re: [Freesurfer] Problem running recon-all

External Email - Use Caution I also see this error which is sent to stderr: /usr/bin/time: cannot run recon-all: No such file or directory It seems to be something related to the time command (or bash keyword) Is your Freesurfer Environment sourced correctly? Here is the wiki

Re: [Freesurfer] Problem running recon-all

-MTOjXS2Ej1uEpNgZ9lfvkJzcnj7SR5NRRe89nzPhY3jV3X1RPryu31aaVnBfDV7xeQ-b5WO6aR70li-RGAhVttoiUOo_E_Pj4-motaxaqZfNAhXYFAezM4dVSZlRAPrkwuMJG-Op02Vd54RwqKG-0U9qMFpYXqv7SLkSpIzyjUtjEw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FSetupConfiguration_Linux Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Gregory Book Sent: Tuesday

[Freesurfer] Problem running recon-all

External Email - Use Caution I recently installed freesurfer 7.4.1 on a Debian 12 system (using the Ubuntu 22 .tar.gz). When running recon-all, I get the following error: -bash: /opt/freesurfer/freesurfer-7.4.1/bin/recon-all: cannot execute: required file not found Paths are all

[Freesurfer] recon-all error

External Email - Use Caution I installed freesurfer 7.4.1 on Debian 12 (using the Ubuntu 22 .tar.gz). Some programs run fine, but some do not. When running recon-all, I get the following error: -bash: /opt/freesurfer/freesurfer-7.4.1/bin/recon-all: cannot execute: required file

[Freesurfer] Options to decrease computation time

External Email - Use Caution I'm curious if there are options to decrease computation time, even at the expense of quality? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] RA/programmer job posting - neuroinformatics, big data {Disarmed} {Disarmed}

The Olin Neuropsychiatry Research Center (http://nrc-iol.org ) located in Hartford, CT USA is looking for a research

[Freesurfer] Longitudinal study concept question

In writing a paper of longitudinal changes in a large heterogeneous population with no group comparisons, what would be considered "more important" to include: absolute ROI volumes, or volumes corrected for ICV? Using ICV corrected volumes makes sense when comparing groups, but when just

[Freesurfer] Job postings: Post-doc & Data manager/programmer

The Olin Neuropsychiatry Research Center, located in Hartford CT, USA is looking to fill 2 open positions. The Olin Neuropsychiatry Research Center has an opening for a post-doc specializing in neuroinformatics, big-data analysis, and machine learning. The Olin Center is the psychiatric research

[Freesurfer] Post-doc opening in Neuroinformatics

The Olin Neuropsychiatry Research Center has an opening for a post-doc specializing in neuroinformatics, big-data analysis, and machine learning. The Olin Center is the neuropsychiatric research center within Hartford Hospital’s Institute of Living campus, in Hartford, CT. We house a Siemens Skyra

[Freesurfer] Data manager/programmer position

The Olin Neuropsychiatry Research Center is seeking a data manager/programmer to help maintain neuroimaging databases in support of multiple NIH funded projects. The Olin Center is a neuropsychiatric research center within Hartford Hospital’s Institute of Living campus. We house a 3T MRI, multiple

[Freesurfer] Labeled Nifti atlases

Are there any labeled nifti atlases that correspond to the freesurfer parcellation atlases output from recon-all? I'm basically interested in visualization of group results. -Greg ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu