Re: [Freesurfer] PNM Gui

2018-12-19 Thread Meisler, Steven Lee
referenced in my first message. Thank you in advance for your assistance. Best, Steven From: Meisler, Steven Lee Sent: Tuesday, December 4, 2018 9:38:12 AM To: freesurfer@nmr.mgh.harvard.edu Subject: PNM Gui Hello FS team, When I try to run Physiological Noise

[Freesurfer] PNM Gui

2018-12-04 Thread Meisler, Steven Lee
Hello FS team, When I try to run Physiological Noise Modeling through the PNM GUI, I get an error message saying that I don't have permission to run the script "_pnm_stage3." Do you know how I may remedy this? Thanks, Steven -- Steven L. Meisler, M.S.E. Clinical Research

Re: [Freesurfer] Physiological Noise Regression from rsMRI

2018-10-23 Thread Meisler, Steven Lee
From: Meisler, Steven Lee Sent: Tuesday, October 23, 2018 12:21:08 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Physiological Noise Regression from rsMRI Thank you! At what point in the processing pipeline should this happen? For example, should

Re: [Freesurfer] Physiological Noise Regression from rsMRI

2018-10-23 Thread Meisler, Steven Lee
mkanalysis-sess, add -nuisreg filename N where N is the number of columns you want to include On 10/18/18 10:34 AM, Meisler, Steven Lee wrote: Hi all, I am currently developing a pipeline to remove physiological noise (respiratory and cardiac) from rsMRI images. I am at the point where I have created

[Freesurfer] Physiological Noise Regression from rsMRI

2018-10-18 Thread Meisler, Steven Lee
Hi all, I am currently developing a pipeline to remove physiological noise (respiratory and cardiac) from rsMRI images. I am at the point where I have created the regressors using fast_retroicor.m from the physiological data logs. When I add the columns of the regressors up and plot the