Re: [Freesurfer] Checking segmentations with aseg.mgz

2016-07-25 Thread Reema Jayakar
Hi Dr. Fischl, Thank you for clarifying that about norm.mgz for checking segmentations. Good to know that brain and brainmask wash out low contrast borders. Cheers, Reema -- *Reema Jayakar, M.A.* Doctoral Candidate - Clinical Neuropsychology Health Resources and Services Administration (HRSA

[Freesurfer] Checking segmentations with aseg.mgz

2016-07-18 Thread Reema Jayakar
mentations. Thanks in advance for your help! Reema -- *Reema Jayakar, M.A.* Doctoral Candidate - Clinical Neuropsychology Health Resources and Services Administration (HRSA) Fellow Department of Psychology Georgia State University Email: rjayak...@student.gsu.edu __

[Freesurfer] Slight rotation when viewing brainmask.mgz in Freeview - why and is this a cause for concern?

2016-07-12 Thread Reema Jayakar
help! Reema -- *Reema Jayakar, M.A.* Doctoral Candidate - Clinical Neuropsychology Health Resources and Services Administration (HRSA) Fellow Department of Psychology Georgia State University Email: rjayak...@student.gsu.edu ___ Freesurfer mailing list

[Freesurfer] Visually inspecting subcortical segmentations + what command should be run to apply manual fixes to aseg.mgz voxels?

2016-07-12 Thread Reema Jayakar
right resource would be great! Thank you! Reema -- *Reema Jayakar, M.A.* Doctoral Candidate - Clinical Neuropsychology Health Resources and Services Administration (HRSA) Fellow Department of Psychology Georgia State University Email: rjayak...@student.gsu.edu __

[Freesurfer] Troubleshooting for error - neither NIfTI-1 qform or sform are valid

2016-03-22 Thread Reema Jayakar
, thank you very much and I will keep you posted! Best, Reema -- *Reema Jayakar, M.A.* Doctoral Candidate - Clinical Neuropsychology Health Resources and Services Administration (HRSA) Fellow Department of Psychology Georgia State University Email: rjayak...@student.gsu.edu Message: 24 > Date:

[Freesurfer] Troubleshooting for error - neither NIfTI-1 qform or sform are valid

2016-03-20 Thread Reema Jayakar
an provide to resolve this issue would be really appreciated! Thank you, Reema -- *Reema Jayakar, M.A.* Doctoral Candidate - Clinical Neuropsychology Health Resources and Services Administration (HRSA) Fellow Department of Psychology Georgia State University Email: rjayak...@student.gsu.edu 017_e