Hi FreeSurfer team,
I am trying to run qcache but it is exiting with errors because it is not able
to find files in the fsaverage/surf directory. I looked in
$FREESURFER_HOME/subjects/fsaverage and there is indeed not a surf folder.
Should I use one of the other directories like fsaverage3?
On Mon, 30 Mar 2020, Wang, Lily wrote:
> Hi Dr. Greve,
>
> I'm not seeing any glaring issues with inclusion of cerebellum or skull in
> the surfaces or the mgz. There is a bit of inclusion of the cerebellum in
> the wm.mgz. However, two things that do seem strange a
at the wm.mgz and
brainmask.mgz and the lh.orig.nofix surface to see if there is a large part of
skull or cerebellum that is encompassed in the orig.nofix surface
On 3/30/2020 11:26 AM, Wang, Lily wrote:
Hi All,
I have a subject whose T1 quality is quite good but reconstruction exited with
errors so
Hi,
I am trying to get voxel by voxel stats for fmajor on a threshold that's not
the 0.2 default because when I looked at merged nii, fmajor is constructed
correctly but on a different threshold. This is the command I used:
dmri_pathstats --intrk fmajor_PP_avg33_mni_bbr/path.pd.trk --dtbase
Hi Freesurfer Team,
I made a qdec table with columns fsid, disease status (control and diseased),
age, df, db, dtotal (which are three continuous psychological test scores). I
performed one analysis in qdec with disease status as the discrete factor and
each of the three test scores as the
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Wang, Lily
Sent: Thursday, August 29, 2019 11:17 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Corresponding structures to an ROI
Sorry, I meant the masks were made using FLAIR. Does bbregister work on
registering T1
9 10:25 AM, Wang, Lily wrote:
> Hi All,
>
> I have several white matter ROI masks unique to each subject that were
> made using the subjects' T2 scans and I would like to use wmparc to
> find out what brain structures those ROI's correspond to. I'm guessing
> that I will need to ei
Hi All,
I have several white matter ROI masks unique to each subject that were made
using the subjects' T2 scans and I would like to use wmparc to find out what
brain structures those ROI's correspond to. I'm guessing that I will need to
either register T1 to T2 or T2 to T1 at one point, which
