Re: [Freesurfer] Gcuts erasing voxels within the ventricles

2017-08-09 Thread Bruce Fischl
Hi Elijah gcuts is a contributed tool (from Mike Chee's lab) and not one that we wrote, so I don't think we can help. sorry Bruce On Wed, 9 Aug 2017, Elijah Mak wrote: Hi Freesurfer Team, I am using gcut to improve the skull stripping on some subjects. I noticed that it is also removing

[Freesurfer] Gcuts erasing voxels within the ventricles

2017-08-09 Thread Elijah Mak
Hi Freesurfer Team, I am using gcut to improve the skull stripping on some subjects. I noticed that it is also removing some of the voxels in the ventricles of the brainmask.mgz (picture attached). Is this normal behaviour?  Thanks for your time. Best Wishes, Elijah