it's not delicate - it's just confusing for us when you use it as it
refers to a specific dataset
cheers
Bruce
On Mon, 18 Nov 2019, An wrote:
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Sorry for the confusion, I don't know it has a delicated meaning. I just
followed the steps on the
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Sorry for the confusion, I don't know it has a delicated meaning. I just
followed the steps on the freesurfer download and install webpage to
install the software and then ran the recon-all command. I will try to
avoid this kind of issues in the
why did you call it bert? It just makes things confusing
On 11/18/19 2:53 PM, An wrote:
>
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>
> Here is my recon-all command line:
> recon-all -i ana_Vol.nii -s bert -all
> Many thanks.
>
> Best,
> An
>
>
> Greve, Douglas N.,Ph.D.
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Here is my recon-all command line:
recon-all -i ana_Vol.nii -s bert -all
Many thanks.
Best,
An
Greve, Douglas N.,Ph.D. 于2019年11月18日周一 下午2:33写道：
> What was your original recon-all command?
>
> On 11/18/19 1:48 PM, An wrote:
> >
> >
What was your original recon-all command?
On 11/18/19 1:48 PM, An wrote:
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> I want to map the intensities of the volumes on its corresponding
> surface in order to get the functional values on each vertex in each
> frame. I ran recon-all for the
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I want to map the intensities of the volumes on its corresponding surface
in order to get the functional values on each vertex in each frame. I ran
recon-all for the anatomical volume and saved all outputs(mri,labels,surf
and etc.) in the bert folder.
I don't understand what you are trying to do. I'm very confused by your
mentioning of bert. What does bert have to do with any of your data?
On 11/14/19 10:47 AM, An wrote:
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> Oops sorry for the mistakenly reply. I will pay more attention in the
>
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Oops sorry for the mistakenly reply. I will pay more attention in the
future.
Bert is the folder with the anatomical data. I tried the following steps
with the 4D volume but failed. Then I checked the registration result after
bbregister and found
If you have an anatomical MR that you have run through recon-all, then
just use that one instead of bert in your steps below
ps. Please remember to post to the FS list and not to us personally
On 11/12/19 8:41 PM, an wrote:
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> Many thanks.
>
> I got the
Don't do the 1st step.
Why are you registering it to bert? I'm pretty sure bert did not participate in
your fmri study
When you run mri_vol2surf, it will probably work better with --projfrac 0.5
On 11/11/2019 1:32 PM, An wrote:
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Hi Prof. Greve,
Thanks for
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Hi Prof. Greve,
Thanks for your reply and sorry for the confusion.
I have a 4D fMRI dataset with 10 time frames, where the intensity of each
voxel is between [-1,1] and not integers. I want to map the intensities of
the volumes on its corresponding
When you say it is 4D, what do you mean? That each label has its own frame?
On 11/6/19 5:59 PM, 曲岸 wrote:
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> Hi there,
>
> I am working with creating a surface parcellation from a volumetric
> parcellation and have some questions as follows:
>
> 1. If
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Hi there,
I am working with creating a surface parcellation from a volumetric
parcellation and have some questions as follows:
1. If the volumetric parcellation is a labeled 4D multi-frame dataset,
could I still use the mris_sample_parc? Or could
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