Thanks, that should be helpful.
Is there a way to use mris_anatomical_stats on the .annot file that the cluster
correction creates within the qdec analysis folder, or do I need to map the
annotation to a subject in order to use mris_anatomical_stats? If I try to run
mris_anatomical_stats on
i was going to have you link wm.mgz to T1.mgz as a hack to get
mris_anatomical_stats to dump the colortable, but i see that
mris_anatomical_stats complains about running against fsaverage. so
rather than add a hack on a hack, i'll just update mris_info to dump the
colortable of a .annot file.
or you can use the -c option of mris_anatomical_stats to extract the
colortable from the .annot file, edit the colors in that colortable, and
then specify that colortable with the -colortable option of tksurfer.
n.
On Fri, 2010-04-09 at 14:49 -0400, Douglas N Greve wrote:
The only easy way to
Hi,
Is there any way to extend the colortable in freesurfer?
Cheers,
Eylem
Forschungszentrum Juelich
it's just a text file, so sure. If you want it integrated into
tksurfer/tkmedit we'll need to compile it in as well.
cheers,
Bruce
On Wed, 22 Jul 2009, Eylem Kirlangic wrote:
Hi,
Is there any way to extend the colortable in freesurfer?
Cheers,
Eylem
Satrajit Ghosh wrote:
1. Is there a matlab function to read the colortable from an annot file?
Not that I know of.
2. Is there a reason why several of the annotvalues generated by the
classifier using rh.atlas2005_simple.gcs do not have corresponding names in
surface_labels.txt? I
