I think the latest version of FSL has this sorted out (it doesn't change
your machine's POSIXLY_CORRECT setting except briefly in the middle of
fsl_sub).
Peace,
Matt.
From: chenchunhuichina chenchunhuich...@gmail.com
Date: Friday, November 1, 2013 2:55 AM
To: Matt Glasser m...@ma-tea.com
Cc:
Rather one unsets it like this:
unset POSIXLY_CORRECT
Peace,
Matt.
-Original Message-
From: Matt Glasser [mailto:m...@ma-tea.com]
Sent: Friday, May 18, 2012 12:47 PM
To: 'freesurfer@nmr.mgh.harvard.edu'
Subject: RE: [Freesurfer] ERROR: comparison in expression (FS with SGE)
Another
. Then one gets the best of both worlds.
Peace,
Matt.
-Original Message-
From: Matt Glasser [mailto:m...@ma-tea.com]
Sent: Thursday, March 22, 2012 5:36 PM
To: 'freesurfer@nmr.mgh.harvard.edu'
Subject: RE: [Freesurfer] ERROR: comparison in expression (FS with SGE)
I'm dredging this 2
Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Xue, Feng
Sent: Sunday, March 14, 2010 1:37 PM
To: Bruce Fischl
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] ERROR: comparison in expression (FS with SGE)
Thanks! I
Sorry, I didn't notice that the reply address was not the list, I've
done re-post it.
Is there any method to check whether it is ok? For SGE, it might only
write errors to dot e files instead of warnings.
It seemed like a shell syntax error, however, I don't have that
experience to check the
if it was a syntax error then recon-all wouldn't have finished, so I'm
not sure what's going on. You should visually inspect the surfaces and
segmentations to make sure they are all ok.
cheers,
Bruce
On Mon, 15 Mar 2010, Xue, Feng
wrote:
Sorry, I didn't notice that the reply address was
Thanks! I would check them later.
On Mon, Mar 15, 2010 at 1:24 AM, Bruce Fischl
fis...@nmr.mgh.harvard.edu wrote:
if it was a syntax error then recon-all wouldn't have finished, so I'm not
sure what's going on. You should visually inspect the surfaces and
segmentations to make sure they are
Dear Bruce FS experts,
Please forgive my re-post, for I havn't got any response from last post.
I do appreciate if anyone could give me a hint or suggestion.
++
We are running freesurfer with Sun GridEngine. Currently, we
what does the recon-all.log say? Did the recon finish correctly? Does
this happen if you just run it on the command line?
Bruce
On Sat, 13 Mar 2010,
Xue, Feng wrote:
Dear Bruce FS experts,
Please forgive my re-post, for I havn't got any response from last post.
I do appreciate if anyone
