On 9/2/13 12:02 PM, "Glasser, Matthew" <glass...@wusm.wustl.edu> wrote:
>Hi Bruce, > >Connectome Workbench commandline utilities can do this with FSL warp >fields: > >wb_command -surface-apply-warpfield > >One needs to use the inverse warp as the <warpfield> argument and the >forward warp as the -fnirt <forward-warp>. > >Peace, > >Matt. > >On 9/2/13 11:19 AM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: > >>A veritable game of telephone! Thanks Jesper. Matt? >> >>On Mon, 2 Sep 2013, Jesper Andersson wrote: >> >>> Hi guys, >>> I didn't think we had any tools for doing that, and said so much on the >>>FSL >>> mailbase. But apparently the WashU people has something that does just >>>that >>> for you. I think the best person to contact about the details is Matt >>> Glasser. >>> >>> J >>> >>> On 2 Sep 2013, at 15:58, Saad Jbabdi <s...@fmrib.ox.ac.uk> >>> wrote: >>> >>> Hi In Probtrackx, this is done internally. >>> If you just want to transform the vertex coordinates, then I think >>> you'll need to play with the FNIRT source code - I've CC'd Jesper who >>> knows better. >>> >>> Cheers, >>> Saad >>> >>> >>> >>> On 2 Sep 2013, at 15:56, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >>> wrote: >>> >>> you might check on the FSL list. I think I've seen some >>> traffic indicating that there are some tools for doing >>> this. I'l cc Saad as he might know >>> >>> cheers >>> Bruce >>> >>> >>> On Mon, 2 Sep 2013, Douglas Greve wrote: >>> >>> Hi Shani, I don't think you can apply a FNIRT >>> transform to a surface. >>> doug >>> On 9/2/13 8:20 AM, Shani Ben Amitay wrote: >>> Dear freesurfer people, >>> Any idea whether I can apply transformation >>> that was calculated by fsl >>> fnirt on the white/pial surfaces calculated >>> using the freesurfer >>> stream? >>> Thanks! >>> Shani >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> >>>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >>> The information in this e-mail is intended only for the >>> person to whom it is >>> addressed. If you believe this e-mail was sent to you in >>> error and the e-mail >>> contains patient information, please contact the Partners >>> Compliance HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was >>> sent to you in error >>> but does not contain patient information, please contact >>> the sender and properly >>> dispose of the e-mail. >>> >>> >>> >>> -- >>> Saad Jbabdi >>> University of Oxford, FMRIB Centre >>> >>> JR Hospital, Headington, OX3 9DU, UK >>> (+44)1865-222466 (fax 717) >>> www.ndcn.ox.ac.uk/team/researchers/saad-jbabdi >>> >>> >>> > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
