Re: [Freesurfer] Freesurfer base file question

2012-04-04 Thread Tina Jeon
Doug or any freesurfer experts can you please answer this question it is quite urgent: I have created some manual cortical labels in freesurfer using tksurfer. The .labels file containing the vertices of the cortical labels does not correspond to the labels of the pial surface even though they

Re: [Freesurfer] Freesurfer base file question

2012-04-04 Thread Douglas N Greve
Hi Tina, sorry for the delay. Most of us are involved in the FS finishing up today. We don't know anything about a base file created by recon-all. It looks like your created it with mri_annotation2label? If so, then it is not a surface, and I'm not sure what mris_convert would do with it. I'm

Re: [Freesurfer] Freesurfer base file question

2012-04-02 Thread Douglas N Greve
Hi Tina, sorry no one got to your first email. Sometimes emails do fall through the cracks, so always feel free to repost. It is not clear to me what command you are running or what you are trying to do. Can you supply more detail? doug On 04/02/2012 11:55 AM, Tina Jeon wrote: Hi Doug could

Re: [Freesurfer] Freesurfer base file question

2012-04-02 Thread Tina Jeon
No worries about that. I have created some manual cortical labels in freesurfer using tksurfer. The .labels file containing the vertices of the cortical labels does not correspond to the labels of the pial surface even though they were drawn on the pial. I noticed however, that they do