Re: [Freesurfer] How to extract the GM and WM

run it with -autorecon2 and -autorecon3 On 5/25/2021 1:47 PM, Camargo, Aldo wrote: External Email - Use Caution External Email - Use Caution Hi Bruce, I was wondering if there is way to continue the process to recon-all once I have done the recon-all with the option

Re: [Freesurfer] How to extract the GM and WM

External Email - Use Caution Hi Bruce, I was wondering if there is way to continue the process to recon-all once I have done the recon-all with the option -autorecon1. Thanks a lot, Aldo From: freesurfer-boun...@nmr.mgh.harvard.edu on

Re: [Freesurfer] How to extract the GM and WM

External Email - Use Caution Thanks a lot Bruce, Have a nice day, Aldo From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Fischl, Bruce Sent: Monday, May 24, 2021 10:17 AM To: Freesurfer support list Subject: Re: [Freesurfer] How to extract the GM and WM Hi Aldo

Re: [Freesurfer] How to extract the GM and WM

Hi Aldo Usually we just run recon-all with -all instead of the individual -autorecon options. This will give you pretty much everything, including GM and WM Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Camargo, Aldo Sent: Sunday, May 23, 2021 11:25 PM To: Freesurfer

[Freesurfer] How to extract the GM and WM

External Email - Use Caution Hi Freesurfer experts: I want to extract the White Matter and the Gray Matter from a T1 image. I have extracted the brain by using the command: recon-all with the option -autorecon1 Thanks a lot and have a nic day, Aldo