list
Subject: Re: [Freesurfer] IndexError: list index out of range
Thanks Sarah, I haven’t been able to replicate this - do you mind sending the
stats file that you’re using as input?
Andrew
On February 15, 2018 at 3:58:17 PM, Makaretz, Sara Johanna
(smakar...@mgh.harvard.edu<mailto:sma
Python 2.7.3 -- EPD 7.3-1 (64-bit)
Sara
From: Hoopes, Andrew
Sent: Thursday, February 15, 2018 3:56:22 PM
To: Makaretz, Sara Johanna; Freesurfer support list
Subject: Re: [Freesurfer] IndexError: list index out of range
Hi Sara and Arkadiy,
What version of p
Hi Andrew,
python --version
=
Python 2.7.3 -- EPD 7.3-1 (64-bit)
Sara
From: Hoopes, Andrew
Sent: Thursday, February 15, 2018 3:56:22 PM
To: Makaretz, Sara Johanna; Freesurfer support list
Subject: Re: [Freesurfer] IndexError: list index out of range
Hi Sara
ons.meas)
File "/autofs/cluster/freesurfer/centos7_x86_64/stable6/bin/fsutils.py", line
115, in parse
seg = strlst[1] # segmentation id is in the 2nd field
IndexError: list index out of range
____
From: freesurfer-boun...@nmr.mgh.har
_______
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Makaretz, Sara Johanna
<smakar...@mgh.harvard.edu>
Sent: Tuesday, February 13, 2018 10:12:07 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] IndexError: l
ovs...@mclean.harvard.edu>
Sent: Monday, January 8, 2018 11:50:42 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] IndexError: list index out of range
Hi Doug,
I sent you the tar files, but just wanted to update you that I tried running
this with just one subjects and am
Hi Doug,
I sent you the tar files, but just wanted to update you that I tried running
this with just one subjects and am still getting an error but a different one.
The two inputs and output errors in the terminal are pasted below:
Can you tar up just the rh.aparc.stats files and send them to me?
On 12/21/2017 03:41 PM, Maksimovskiy, Arkadiy wrote:
>
> Hi All,
>
> I wanted to follow up on this thread because I have been getting a
> similar type of an error.
>
> Here is the info from the terminal:
>
>
Hi All,
I wanted to follow up on this thread because I have been getting a similar type
of an error.
Here is the info from the terminal:
[arkadiysimac:Freesurfer/Freesurfer_Files_with_Freesurfer_Masks/Post_Manual_Edits]
amaksimovskiy% aparcstats2table --subjects SILVA033 SILVA035 SILVA039
what happens if you run the asegstats2table command outside of qdec?
On 12/8/17 12:19 AM, Ayushi Shukla wrote:
Hello everyone,
I am trying to run a cortical thickness analysis in QDEC. I have
recon-all and qcache but while trying to run asegstats2table, I keep
getting the error-list index
Hello everyone,
I am trying to run a cortical thickness analysis in QDEC. I have recon-all
and qcache but while trying to run asegstats2table, I keep getting the
error-list index out of range.
asegstats2table --subjects 101 102 103 INSP104 INSP105 INSP107 INSP108
INSP109 112 113 114-S 115-S
Hi Sandra,
is the environment variable SUBJECTS_DIR setup correctly ? in newer
versions of the script this needs to be passed on the command line, but
in 5.1 I think it needs to be set as an evironment variable.
Best, Martin
On 06/21/2013 04:35 AM, Sandra Preissler wrote:
Dear freesurfer
Dear freesurfer users,
we wanted to do longitudinal analyses for two different time points.
So we did the longitudinal processing as described in the tutorial
(http://ftp.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial#PreparingtheData-QCACHE)
The Post-Processing Longitudinal Data
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