Hello everyone, I am trying to run a cortical thickness analysis in QDEC. I have recon-all and qcache but while trying to run asegstats2table, I keep getting the error-list index out of range.
asegstats2table --subjects 101 102 103 INSP104 INSP105 INSP107 INSP108 INSP109 112 113 114-S 115-S 116-S 117-S INSP119 INSP120 INSP121 INSP122 123 INSP124 125 126 INSP-127 INSP-129 INSP130 INSPD131 INSPD132 133 INSPD134 136 INSP137 INSP138 INSP139 INSP140 INSP141 INSP143 INSP144 --meas volume --tablefile Vol_HV_stats.txt SUBJECTS_DIR : /Applications/freesurfer/subjects Parsing the .stats files Traceback (most recent call last): File "/Applications/freesurfer/bin/asegstats2table", line 548, in <module> id_name_map, measurelist = parsed.parse(options.meas) File "/Applications/freesurfer/bin/fsutils.py", line 115, in parse seg = strlst[1] # segmentation id is in the 2nd field IndexError: list index out of range. This does not happen when I run the same command for a separate group of subjects. The recon-all and qcache ran without error. So I was hoping you could help me resolve this issue. Warm Regards Ayushi Shukla Research Assistant National Institute of Mental Health and Neurosciences Bangalore, India
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