-boun...@nmr.mgh.harvard.edu> on behalf of Douglas Greve
<gr...@nmr.mgh.harvard.edu>
Sent: Friday, October 14, 2016 7:01 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Quantifying volumes
How did you create the label ?
On 10/14/16 12:43 PM, Josue Luiz Dalboni Da Rocha wrote:
Subject:* Re: [Freesurfer] Quantifying volumes
please send command lines
On 10/14/16 6:36 AM, Damien MARIE wrote:
Hi,
Just adding a word about the e-mail of ma colleague Josue. What he
meant is that he extracted volumes for exactly the same ROI (a
merging of destrieux labels of Hechl’s gyrus, Hes
edu> on behalf of Douglas Greve
<gr...@nmr.mgh.harvard.edu>
Sent: Friday, October 14, 2016 5:54 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Quantifying volumes
please send command lines
On 10/14/16 6:36 AM, Damien MARIE wrote:
Hi,
Just adding a word about the
<http://nmr.mgh.harvard.edu>>
Sent: Wednesday, October 5, 2016 5:19 PM
To: freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Quantifying volumes
I would binarize the curv file with
mri_binarize --i lh.yourcurvfile --abs --min
reesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve
<gr...@nmr.mgh.harvard.edu>
Sent: Wednesday, October 5, 2016 5:19 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Quantifying volumes
I would binarize the curv fi
ay, October 5, 2016 5:19 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Quantifying volumes
I would binarize the curv file with
mri_binarize --i lh.yourcurvfile --abs --min .001 --o
lh.yourcurvfilebin.mgh
Then compute the volume with
mri_segstats --seg lh.yourcurvfilebin.m
2016 9:41 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Quantifying volumes
>
> What is the nature of the segmentation? Is it just a binary (1=in,
> 0=out) segmentation? And what file format? In general we don't use .w
> anymore, but it can be converte
ehalf of Bruce Fischl
> <fis...@nmr.mgh.harvard.edu>
> Sent: Wednesday, October 5, 2016 3:30 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] Quantifying volumes
>
> Hi Josue
>
> the *.curv won't help you with the volume. If it is a label file you
> s
er 5, 2016 3:30 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Quantifying volumes
Hi Josue
the *.curv won't help you with the volume. If it is a label file you
should be able to give it to mris_anatomical_stats with -l to
compute the volume
cheers
Bruce
On
Wed, 5 Oct 2016, Josue Lui
_
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve
> <gr...@nmr.mgh.harvard.edu>
> Sent: Tuesday, October 4, 2016 9:41 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Fre
Best regards,
Josue
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve
<gr...@nmr.mgh.harvard.edu>
Sent: Tuesday, October 4, 2016 9:41 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Quantif
What is the nature of the segmentation? Is it just a binary (1=in,
0=out) segmentation? And what file format? In general we don't use .w
anymore, but it can be converted into something else.
doug
On 10/03/2016 12:35 PM, Josue Luiz Dalboni Da Rocha wrote:
>
> Dear Douglas,
>
>
> I have a
Dear Douglas,
I have a segmented gyrus curvature file (.curv or .w) and I would like to
calculate the volume (and other statistics) of this gyrus.
I currently only know mris_anatomical_stats to perform that, but requiring a
'.label' file.
Can I extract statistics directly from the ".curv"
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