parameters. See this wiki page for details:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/SkullStripFix
-Louis
From: Daniel Ferreira Padilla dani...@ull.es
Date: September 15, 2011 5:48:30 AM EDT
To: fis...@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Recon-all Error: _FindFacePath
Dear
Hello Khoa,
Thank you very much for your suggestion. I checked both brainmask.mgz and
wm.mgz and it saw ok for me. I have already sent my two scans to Bruce. Hope
something can be done.
Cheers!
Daniel Ferreira
2011/9/13 Khoa Nguyen k...@nmr.mgh.harvard.edu
Hi Daniel,
: [Freesurfer] Recon-all Error: _FindFacePath
Hello Khoa,
Thank you very much for your suggestion. I checked both brainmask.mgz and
wm.mgz and it saw ok for me. I have already sent my two scans to Bruce. Hope
something can be done.
Cheers!
Daniel Ferreira
2011/9/13 Khoa Nguyen
k
To: 'Khoa Nguyen'
Cc: mailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Recon-all Error: _FindFacePath
Hello Khoa,
Thank you very much for your suggestion. I checked both brainmask.mgz and
wm.mgz and it saw ok for me. I have already sent my two scans
@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Recon-all Error: _FindFacePath
Hello Khoa,
Thank you very much for your suggestion. I checked both brainmask.mgz and
wm.mgz and it saw ok for me. I have already sent my two scans to Bruce. Hope
something can be done.
Cheers!
Daniel Ferreira
- Ocultar
Hi Daniel,
Usually when I get the FindFacePath error, the wm.mgz is very bad. You can
try placing control points on the wm and rerun -autorecon2 and
-autorecon3. That worked for me.
-Khoa
On Sat, 10 Sep 2011, Daniel Ferreira Padilla wrote:
Dear Bruce and experts,
I would really
Dear Bruce and experts,
I would really appreciate if you can help me with my scans.
I have successfully processed all my sample but got this same FindFacePath
error with 2 subjects.
I checked the brainmask and wm files and for me they look ok. So I do not
know how can I fix this
Can you send us the complete output?
Cheers
Bruce
On Sep 10, 2011, at 6:17 PM, Daniel Ferreira Padilla dani...@ull.es wrote:
Dear Bruce and experts,
I would really appreciate if you can help me with my scans.
I have successfully processed all my sample but got this same
it means mris_fix_topology, which was the original topology correction
algorithm. Florent Segonne wrote a newer (better) one based on
non-separating loops but it seems to have a rare and hard-to-track-down bug
in it where it can't find a path that should exist
cheers
Bruce
On Fri, 18 Feb
Hi Ilana,
Nick kindly helped me addressing this issue in one of my subjects. In my case
the brainmask had some cortex stripped from
the top and the failure had stemmed from there. I would suggest that you also
check your brainmask.mgz and see if the skull stripping was successful there.
If
Hello,
I'm facing the same problem for one of my subjects. Is there a general solution
for this problem or would you solve this problem on a case by case basis? I saw
posts from others with the same problem.
Thanks for your help,
Nasim
On Nov 29, 2010, at 7:55 AM, Bruce Fischl wrote:
Hi
Hi Nasim,
can you tar and gzip the entire subject dir and send it to us? I'll try
to track it down. In the mean time if you just rerun with the old topo
fixer it should work. Nick can post the appropriate flags
cheers
Bruce
On Tue, 15 Feb
2011, Nasim Maleki wrote:
Hello,
I'm facing the
Hello,
I'm facing the same problem for one of my subjects. Is there a general solution
for this problem or would you solve this problem on a case by case basis? I saw
posts from others with the same problem.
Thanks for your help,
Nasim
On Dec 2, 2010, at 9:18 AM, Jennifer Addicks wrote:
Hello,
I have uploaded the subject/mri/orig/001.mgz file for the participant
with the error described here:
https://www.nmr.mgh.harvard.edu/facility/filedrop/showgroup/22563/1/7580a7afd98a5fbbc1519ff23f3a37ff
Thanks,
Jennifer
On Mon, Nov 29, 2010 at 7:55 AM, Bruce Fischl
Hi Jennifer,
if you put this on our drop site we'll take a look.
cheers
Bruce
On Mon, 29 Nov 2010, Jennifer Addicks wrote:
Hello,
I have completed cortical reconstructions for 79 of 80 scans without
error. However, the recon for one participant exited during topology
correction with the
Hi Ryan,
if you post the subject for us we'll take a look.
cheers
Bruce
On Fri, 16 Apr 2010
muet0...@umn.edu wrote:
Hello,
I am getting the following error in the $subjid/scripts/recon-all.log:
ERROR: _FindFacePath: could not find path!
Linux blade279 2.6.5-7.322-smp #1 SMP Mon Feb 8
Hello,
I am getting the following error in the $subjid/scripts/recon-all.log:
ERROR: _FindFacePath: could not find path!
Linux blade279 2.6.5-7.322-smp #1 SMP Mon Feb 8 09:14:05 UTC 2010 x86_64
x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Fri Apr 16 08:23:35 CDT 2010
The
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