Clinical Research Coordinator
> >
> > *From: *<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of
> Douglas
> > Greve <dgr...@mgh.harvard.edu>
> > *Reply-To: *Freesurfer support list
> <freesurfer@nmr.mgh.harvard.edu>
*To: *"freesurfer@nmr.mgh.harvard.edu"
<freesurfer@nmr.mgh.harvard.edu>
> *Subject: *Re: [Freesurfer] Recon-all w/ Hammersmith atlas
>
> Sorry, just seeing that you also want cortical summaries. Those might
> be easier. You should run
ly-To: *Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
> *Date: *Tuesday, April 17, 2018 at 9:33 AM
> *To: *"freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
> *Subject: *Re: [Freesurfer] Recon-all w/ Hammersmith atlas
>
> Sorry, ju
fer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas Greve
<dgr...@mgh.harvard.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, April 17, 2018 at 9:33 AM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Sub
Sorry, just seeing that you also want cortical summaries. Those might be
easier. You should run recon-all on the T1 template for the hammersmith.
You can then create your own hammersmith annotation by mapping the atlas
labels onto the surface (mri_vol2surf) and then mris_seg2annot. You can
There is not an easy way to do this. If you have access to the original
hammersmith data, you can run each subject through FS, copy/convert the
manual labels into the conformed space for each subject, then build your
own volume-based atlas. If that is something you are up for, let me know
and
