Re: [Freesurfer] Transformation between spaces

2017-10-10 Thread Matt Glasser
ampana <campana.flore...@gmail.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Tuesday, October 10, 2017 at 12:12 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Transformation between spaces Hi Matt, I foll

Re: [Freesurfer] Transformation between spaces

2017-10-10 Thread Florence Campana
gt; Campana <campana.flore...@gmail.com> > Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Date: Monday, October 9, 2017 at 9:25 PM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: [Freesurfer] Transformation between space

Re: [Freesurfer] Transformation between spaces

2017-10-09 Thread Matt Glasser
Monday, October 9, 2017 at 9:25 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Transformation between spaces Hi Matt, Thank you for your quick input ; I did not try yet to use melodic, it seems indeed to be the most straightforward solution, I will

[Freesurfer] Transformation between spaces

2017-10-09 Thread Florence Campana
reve > <gr...@nmr.mgh.harvard.edu> > Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Date: Monday, October 9, 2017 at 7:20 PM > To: <freesurfer@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] Transformation between spaces > > > How did you get y

Re: [Freesurfer] Transformation between spaces

2017-10-09 Thread Matt Glasser
rfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Monday, October 9, 2017 at 7:20 PM To: <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Transformation between spaces How did you get your ICA analysis into MNI305 (or MNI152) space? You're ICA intergro

Re: [Freesurfer] Transformation between spaces

2017-10-09 Thread Douglas Greve
How did you get your ICA analysis into MNI305 (or MNI152) space? You're ICA intergroup comparisons will only be as good as that space -- how you get it onto the surface from there is not so important. You can run recon-all on the MNI152, sample the ICA maps onto the surface, then use the

[Freesurfer] Transformation between spaces

2017-10-09 Thread Florence Campana
Dear freesurfer experts, I ran a spatial ICA in volume and would like to visualize the components in surface in order to assess the overlap between the independent components and my ROI (defined on surface). However after reading this paper, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862732/,