Re: [Freesurfer] Unknown regions in cortical parcellation

2017-09-13 Thread Aidan Murphy
Bruce, I've uploaded one of our subjects to the FileDrop http://gate.nmr.mgh.harvard.edu/filedrop2/?p=31qhh4docnq The areas we're concerned with are temporal regions. [151,150,131] is one instance of these unknown entorhinal regions. Aidan On Wed, Sep 13, 2017 at 2:43 PM, Bruce Fischl

Re: [Freesurfer] Unknown regions in cortical parcellation

2017-09-13 Thread Bruce Fischl
Hi Jake if you upload a subject and send us the voxel coords you are looking at one of us will take a look cheers Bruce On Wed, 13 Sep 2017, Jake Rieke wrote: We are using Freesurfer v6.0 Biomedical Engineer, Brain Rehabilitation Research CenterMalcolm Randall VA Medical Center, 1601 SW

Re: [Freesurfer] Unknown regions in cortical parcellation

2017-09-13 Thread Jake Rieke
We are using Freesurfer v6.0 Biomedical Engineer, Brain Rehabilitation Research Center Malcolm Randall VA Medical Center, 1601 SW Archer Road, Gainesville, FL 32608 Phone: 1-352-376-1611 ext. 5249, E-mail: jakeri...@gmail.com On Thu, Sep 7, 2017 at 6:17 PM, Douglas N Greve

Re: [Freesurfer] Unknown regions in cortical parcellation

2017-09-07 Thread Douglas N Greve
what version of FS are you using? On 09/07/2017 03:19 PM, Aidan Murphy wrote: > > We're running QA on Freesurfer's aseg and aparc+aseg volumes. On the > aparc volume we're noticing fairly large unknown regions in what > should be entorhinal cortex, specifically where it comes up against > the