Re: [Freesurfer] difference in T1 and T2 resolution

2017-06-14 Thread Douglas Greve
" <gr...@nmr.mgh.harvard.edu> *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] difference in T1 and T2 resolution This is not due to a difference between T1 and T2 resolution. The problem is that the two T1 volumes (001.mgz and 002.mgz) are difference sizes. It is probably

Re: [Freesurfer] difference in T1 and T2 resolution

2017-06-14 Thread John Anderson
, 2017 at 10:02 AM From: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] difference in T1 and T2 resolution This is not due to a difference between T1 and T2 resolution. The problem is that the two T1 volumes (001

Re: [Freesurfer] difference in T1 and T2 resolution

2017-06-14 Thread Douglas Greve
Anderson wrote: Thank you for your response. The log file is attached *Sent:* Tuesday, June 13, 2017 at 2:02 AM *From:* "Douglas Greve" <gr...@nmr.mgh.harvard.edu> *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] difference in T1 and T2 resolution can you send the log f

Re: [Freesurfer] difference in T1 and T2 resolution

2017-06-14 Thread John Anderson
Thank you for your response. The log file is attached     Sent: Tuesday, June 13, 2017 at 2:02 AM From: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] difference in T1 and T2 resolution can you send the log file?  

Re: [Freesurfer] difference in T1 and T2 resolution

2017-06-13 Thread Douglas Greve
MultiRegistration::loadMovables: voxel size is different /recons/subj1/mri/orig/002.mgz. Jon *Sent:* Sunday, June 11, 2017 at 2:12 PM *From:* "Matt Glasser" <m...@ma-tea.com> *To:* "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> *Subject:* Re: [Freesurfer] differe

Re: [Freesurfer] difference in T1 and T2 resolution

2017-06-11 Thread John Anderson
/002.mgz.     Jon Sent: Sunday, June 11, 2017 at 2:12 PM From: "Matt Glasser" <m...@ma-tea.com> To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] difference in T1 and T2 resolution What was the error message?   Peace,

Re: [Freesurfer] difference in T1 and T2 resolution

2017-06-11 Thread Matt Glasser
r@nmr.mgh.harvard.edu> Subject: [Freesurfer] difference in T1 and T2 resolution Dear Freesurfer experts, I have T1 and T2 images were unfortunately acquired with different resolution (i.e the voxel sizes is not the same) T1 is 280X280X208 T2 is 270X270X200 I tried to run "recon-all"

[Freesurfer] difference in T1 and T2 resolution

2017-06-11 Thread John Anderson
Dear Freesurfer experts, I have T1 and T2 images were unfortunately acquired with different resolution (i.e the voxel sizes is not the same) T1 is 280X280X208 T2 is 270X270X200 I tried to run "recon-all"  but it failed to process the data. The command that I used is : pbsubmit -c "