Hi
I would like to follow up on this question and would appreciate if you could
reply.
Thanks!
Mona
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
Dear Freesurfer experts
Hi
I got an error when I was trying to make an average subject. I attached the log
file.
I appreciate if you could please let me know what the problem is.
make_average_subject --out avgsubject --subjects subj1 subj2 subj 3
labeling Slice
relabeling unlikely voxels in
It should be created by recon-all. Check that subject to see whether it
finished or had an error
On 2/24/17 3:17 PM, Limachia, Gaurang (NIH/NINDS) [F] wrote:
Hello Freesurfer Experts,
I received this error while running the make_avg_subject script. I
would greatly appreciate it if you can
Hello Freesurfer Experts,
I received this error while running the make_avg_subject script. I would
greatly appreciate it if you can point me in the right direction.
Also, I do not know how the aparc.annot file is supposed to be created.
not aligning hemispheres before averaging.
zeroing medial
I have a group of subjects that I have run through the standard freesurfer
(version 5.3) pipeline, for the same subjects I also have T2 volumetric data
and I have created T1/T2 ratio images for each subject. I have registered the
ratio images into Freesurfer space and used mri_vol2surf to
it sounds like you ran out of memory. How much RAM do you have on your
machine?
On Tue, 14 Feb 2012, Adam David Felton wrote:
Hello,
I have run into an error while trying to make an average subject using 200
scans.
When I ran this command I got an error:
make_average_subject --xform
Try running it with --no-aseg.
doug
Adam David Felton wrote:
Hello,
I have run into an error while trying to make an average subject using
200 scans.
When I ran this command I got an error:
*make_average_subject --xform talairach.xfm --out 200avgsub --subjects*
The error:
Hello,
I have run into an error while trying to make an average subject using 200
scans.
When I ran this command I got an error:
*make_average_subject --xform talairach.xfm --out 200avgsub --subjects*
The error:
Allocing output
mri_concat(40491) malloc: *** mmap(size=262144) failed (error
