Re: [Freesurfer] midbrain mask in standard-space?

2018-05-30 Thread Bruce Fischl
] midbrain mask in standard-space?       External Email - Use Caution    The "brainstem pipeline" described here: https: //surfer.nmr.mgh.harvard.edu/fswiki/BrainstemSubstructures Thanks! -Dan On Wed, 30 May 2018, Bruce Fischl wrote: > Hi Dan > > which brainste

Re: [Freesurfer] midbrain mask in standard-space?

2018-05-30 Thread djpeters
To: Freesurfer support list Subject: Re: [Freesurfer] midbrain mask in standard-space?       External Email - Use Caution    The "brainstem pipeline" described here: https://surfer.nmr.mgh.harvard.edu/fswiki/BrainstemSubstructures Thanks! -Dan On Wed, 30 May 2018, Bruce Fischl wrote:

Re: [Freesurfer] midbrain mask in standard-space?

2018-05-30 Thread Iglesias Gonzalez, Eugenio
://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of djpet...@u.washington.edu Sent: Wednesday, May 30, 2018 10:51:38 PM To: Freesurfer support list Subject: Re: [Freesurfer] midbrain mask in standard-space

Re: [Freesurfer] midbrain mask in standard-space?

2018-05-30 Thread djpeters
External Email - Use Caution The "brainstem pipeline" described here: https://surfer.nmr.mgh.harvard.edu/fswiki/BrainstemSubstructures Thanks! -Dan On Wed, 30 May 2018, Bruce Fischl wrote: > Hi Dan > > which brainstem atlas do you mean? > > cheers > Bruce > > > On Wed, 30 May

Re: [Freesurfer] midbrain mask in standard-space?

2018-05-30 Thread Bruce Fischl
Hi Dan which brainstem atlas do you mean? cheers Bruce On Wed, 30 May 2018, djpet...@u.washington.edu wrote: >External Email - Use Caution > > Hi Freesurfer email list, > > I'm trying to get the midbrain mask from the brainstem segmentation > pipeline into standard space, for use

[Freesurfer] midbrain mask in standard-space?

2018-05-30 Thread djpeters
External Email - Use Caution Hi Freesurfer email list, I'm trying to get the midbrain mask from the brainstem segmentation pipeline into standard space, for use in analyzing some data in other modalities. I have labeled T1s in individual-space (it's a longitudinal pipeline).