Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

uhyoung Begin forwarded message: From: Juhyoung Ryu <jh67753...@gmail.com<mailto:jh67753...@gmail.com>> Subject: Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0 Date: February 8, 2017 at 11:01:23 AM GMT+9 To: Z K <zkauf...@nmr.mgh.harvard.edu<mailto:z

Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

there is one similar >>> file: RB_all_2016-05-10.vc700.gca >>> Do you think I should drop that file manually from FREESURFER v5.2? >>> Thank you in advance,Juhyoung >>> >>> Begin forwarded message: >>> From: Juhyoung Ryu <jh67753...@gmail

Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

not open GCA >>>> /Applications/freesurfer/average/RB_all_2008-03-26.gca. >>>> That file not exist in ‘average' folder, and there is one similar >>>> file: RB_all_2016-05-10.vc700.gca >>>> Do you think I should drop that file manually from FREESURFE

Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

and there is one similar >>> file: RB_all_2016-05-10.vc700.gca >>> Do you think I should drop that file manually from FREESURFER v5.2? >>> Thank you in advance,Juhyoung >>> >>> Begin forwarded message: >>> From: Juhyoung Ryu <jh67753...

Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

6.gca. >> That file not exist in ‘average' folder, and there is one similar >> file: RB_all_2016-05-10.vc700.gca >> Do you think I should drop that file manually from FREESURFER v5.2? >> Thank you in advance,Juhyoung >> >> Begin forwarded messa

Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

Hello Juhyoung, I noticed from the recon-all.log files that you are using freesurfer v5.2. It was revealed that this version had issues regarding systematic white surface contraction and placement of the pial surface extending too far:

Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

Hi Juhyoung this is a pretty odd bug, but I do have a patch for it. What hardware/software environment are you using? cheers Bruce On Mon, 6 Feb 2017, Juhyoung Ryu wrote: Hi FS developers, I received errors in one of steps in recon-all. I analyzed 111 individual subjects' T1 data using

Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

it means: cd $SUBJECTS_DIR tar czvf for_bruce.tgz ${subject_id} cheers Bruce On Tue, 7 Feb 2017, Juhyoung Ryu wrote: Hi Bruce, Does 'entire subject directory tree' means that the subject’s data containing all preprocessed results before i run FREESURFER? not only raw T1 and T2 file?

Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

Hi Bruce, Does 'entire subject directory tree' means that the subject’s data containing all preprocessed results before i run FREESURFER? not only raw T1 and T2 file? Thank you, Juhyoung. > On Feb 7, 2017, at 10:36 AM, Bruce Fischl wrote: > > Hi Juhyoung > > can

Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

Hi Juhyoung can you tar and gzip the entire subject directory tree and upload that? thanks Bruce On Tue, 7 Feb 2017, Juhyoung Ryu wrote: I uploaded 3 set of T1.nii and T2.nii files for 3 example subjects. You can get subject information here : T1_CUBEE{#subject}.nii #0001 data success FS

Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

I uploaded 3 set of T1.nii and T2.nii files for 3 example subjects. You can get subject information here : T1_CUBEE{#subject}.nii #0001 data success FS processing and #0002 / #0010 data is failed. - Success: 0001 - Failed: 0010, 0002 I did FREESURFER processing using both T1 and

Re: [Freesurfer] mrisComputeCorrelationTerm: delta is not finite at vno 0

Hi Juhyoung can you upload one subject that this happens in to our ftp site? cheers Bruce On Mon, 6 Feb 2017, Juhyoung Ryu wrote: Hi FS developers, I received errors in one of steps in recon-all. I analyzed 111 individual subjects' T1 data using same method, but there are errors in only