Hi Vincent, I don't think it is supposed to be. Is that a problem? doug
On 05/21/2013 09:02 AM, Vincent Koppelmans wrote: > Dear FreeSurfer experts, > > I have used dt_recon for tensor fitting of my diffusion data. I used > the following syntax: > > dt_recon --i dwi.nii.gz --b data.bval data.bvec --s subject_ID --o > /DTI --no-reg --no-tal > > When I inspect the FA data, the tensor fitting itself looks good, but > the data is not skull stripped: > > FA map: > > mask: > > I was wondering if I did something wrong and how I should fix this. > > Thanks for your help. > > Best, > > Vincent > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
