Re: [Freesurfer] FreeSurfer transforms

2019-10-21 Thread Vinny K
es from MNI space? Isn't the > > aseg > > sufficient? Or are there structures that are not in the aseg? > > > > cheers > > Bruce > > On Sat, 19 Oct > > 2019, Vinny K wrote: > > > > > > > >

Re: [Freesurfer] FreeSurfer transforms

2019-10-20 Thread Bruce Fischl
: > > External Email - Use Caution > > Hi, > FreeSurfer does a great job in registering atlas structures to patients with > big ventricles.  I'd like to use the calculated FreeSurfer transforms in > bringing a

Re: [Freesurfer] FreeSurfer transforms

2019-10-19 Thread Vinny K
> > > > External Email - Use Caution > > > > Hi, > > FreeSurfer does a great job in registering atlas structures to patients > with > > big ventricles. I'd like to use the calculated FreeSurfer transforms in > > bringing additional subcortical struc

Re: [Freesurfer] FreeSurfer transforms

2019-10-19 Thread Bruce Fischl
structures to patients with big ventricles.  I'd like to use the calculated FreeSurfer transforms in bringing additional subcortical structures from MNI space (either MNI305 or MNI2009b) into native T1 space.  Can you please advise on how to do this? Thanks, Vinny

Re: [Freesurfer] FreeSurfer transforms

2019-10-19 Thread Vinny K
External Email - Use Caution Hi, FreeSurfer does a great job in registering atlas structures to patients with big ventricles. I'd like to use the calculated FreeSurfer transforms in bringing additional subcortical structures from MNI space (either MNI305 or MNI2009b) into native

[Freesurfer] transforms/talairach_with_skull.lta during autorecon1 and autorecon2 - is it a bug or a feature

2011-06-22 Thread Michael Scheel
Dear Freesurfer experts, we are testing a grid computer infrastructure for running freesurfer analysis and are evaluating consistency and reliability of freesurfer results across platforms. Before we start our tests across platforms we conducted some freesurfer analysis on the same computer and

Re: [Freesurfer] transforms/talairach_with_skull.lta during autorecon1 and autorecon2 - is it a bug or a feature

2011-06-22 Thread Bruce Fischl
Hi Michael thanks for the info, we'll look into this. We are aware of some of the issues with running multiple times, but need to look into it further when we find the time Bruce On Wed, 22 Jun 2011, Michael Scheel wrote: Dear Freesurfer experts, we are testing a grid computer

[Freesurfer] transforms

2007-02-02 Thread Chacko Cherian
Hello all, Is there some information on the wiki about the srctoDst voxel-to-voxel transform and the rastoRAas transform? THAnks Chacko. Sucker-punch spam with award-winning protection. Try the free Yahoo!

Re: [Freesurfer] transforms

2007-02-02 Thread Nick Schmansky
Chacko, There is this page: http://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems and there, open Doug Greve's PowerPoint file, which describes the transforms used within Freesurfer. N. On Fri, 2007-02-02 at 10:49 -0800, Chacko Cherian wrote: Hello all, Is there some information on