behalf of "Alexopoulos,
Dimitrios" <dimitriosalexopou...@wustl.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Friday, 20 April 2018 at 19:40
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] using T2 for hippo subfie
...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Iglesias Gonzalez,
Eugenio
Sent: Friday, April 20, 2018 12:27 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email
Dimitrios" <dimitriosalexopou...@wustl.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Friday, 20 April 2018 at 17:46
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Em
: Friday, April 20, 2018 9:23 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
Of course!
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
--
Juan Eugenio Iglesias
ERC
surfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Iglesias Gonzalez,
Eugenio
Sent: Friday, April 20, 2018 7:58 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
You can but recon-all will
Of Iglesias Gonzalez,
Eugenio
Sent: Friday, April 20, 2018 7:58 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
You can but recon-all will resize to 1mm isotropic and you’ll lose your
reesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Friday, 20 April 2018 at 13:47
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
Ok. Can you run -hippocampal-subfield
nzalez,
Eugenio <e.igles...@ucl.ac.uk>
Sent: Friday, April 20, 2018 2:24:59 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
Sorry, I’m not sure I follow. But, if you run recon-all with the hires flag,
then you can jus
Date: Friday, 20 April 2018 at 01:34
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
Yes the output appears ok.
I was under the impression there would be benefits from using the -hires fla
t;e.igles...@ucl.ac.uk>
Sent: Thursday, April 19, 2018 1:57:18 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
External Email - Use Caution
Hi Jim,
>From my experience .8 isotropic is on the edge. Did you take a look at the
>output? You can alway
pport list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] using T2 for hippo subfields
no it is not required
cheers
Bruce
On Wed, 4 Apr 2018, Alexopoulos, Dimitrios wrote:
> Per an earlier post below, is an 'expert_file' always require
ubject: Re: [Freesurfer] using T2 for hippo subfields
no it is not required
cheers
Bruce
On Wed, 4 Apr 2018, Alexopoulos, Dimitrios wrote:
> Per an earlier post below, is an 'expert_file' always required when using the
> -hires opt
: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of
Alexopoulos, Dimitrios <dimitriosalexopou...@wustl.edu>
Sent: Sunday, March 25, 2018 9:47:07 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
Thanks for
edu>
Sent: Sunday, March 25, 2018 9:47:07 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
Thanks for the input. I processed a few subjects (T1-mprage, 0.8mm isotropic)
using the -hires flag, with no expert file, which generated nice surfaces.
Is an 'expert_fi
oun...@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez,
Eugenio <e.igles...@ucl.ac.uk>
Sent: Friday, March 23, 2018 11:02:00 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] using T2 for hippo subfields
Hi Jim,
In the end it’s an empirical question, but my gut feeling is that the T1
rvard.edu>
Subject: [Freesurfer] using T2 for hippo subfields
Hi. We are acquiring sequences on a pediatric cohort that include a T1-mprage
(0.8mm isotropic) and a T2-space (1mm isotropic), and I’d like to run the
hippocampal subfields module on the subjects using FS 6.0.
Is it recommend
Hi. We are acquiring sequences on a pediatric cohort that include a T1-mprage
(0.8mm isotropic) and a T2-space (1mm isotropic), and I'd like to run the
hippocampal subfields module on the subjects using FS 6.0.
Is it recommended/useful to run the multispectral segmentation mode with the
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