Re: [Freesurfer] volume vs surface-based and surface smoothing

2017-10-12 Thread Douglas N Greve
y, October 12, 2017 at 1:39 PM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvard.edu>> > Subject: Re: [Freesurfer] volume vs surface-based and surface smoothing > > Volume-based registration is fine with subject as you have th

Re: [Freesurfer] volume vs surface-based and surface smoothing

2017-10-12 Thread Matt Glasser
Alissa Stafford <alissa.staff...@jhu.edu> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Thursday, October 12, 2017 at 12:42 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] volume vs surface-based and surface smoo

Re: [Freesurfer] volume vs surface-based and surface smoothing

2017-10-12 Thread Alissa Stafford
esurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Thursday, October 12, 2017 at 1:39 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] volume vs surface-based and surf

Re: [Freesurfer] volume vs surface-based and surface smoothing

2017-10-12 Thread Matt Glasser
afford <alissa.staff...@jhu.edu> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Thursday, October 12, 2017 at 12:29 PM To: "Freesurfer@nmr.mgh.harvard.edu" <Freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] volume vs surface-based and surf

[Freesurfer] volume vs surface-based and surface smoothing

2017-10-12 Thread Alissa Stafford
Hello, I am trying to understand the preprocessing functions to successfully complete surface-based analysis. I am confused about what is happening on the volume level and when exactly the surface is being created. My questions revolve around register-sess and rawfunc2surf-sess. Registration