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Firstly I used the command line to extract whole cc, mri_vol2label --c
aseg.auto.mgz --id 192 --l cc.label. Then, I tried to get the labels of the
subregions of cc using the command, mri_vol2label --c cc.mgz --id 251 --l
cc1.label.
Please find the
please send the command line and full terminal output
On 7/18/2019 12:27 PM, Sadia Sheikh wrote:
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Thanks for your response.
I tried mri_vol2label initially but I was facing this error. error: found no
voxels matching id 192. The problem is with my given
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Thanks for your response.
I tried mri_vol2label initially but I was facing this error. error: found
no voxels matching id 192. The problem is with my given command or this
command is not possible for corpus callosum? Please find the attached
output of
you can try mri_vol2label
On 7/17/19 11:16 PM, Sadia Sheikh wrote:
>
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>
> Hello Bruce
>
> I don't have much experience in Freesurfer and I want to get the
> labels of CC. Is there any other way to get corpus callosum labels or
> voxels without using Matlab?
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Hello Bruce
I don't have much experience in Freesurfer and I want to get the labels of
CC. Is there any other way to get corpus callosum labels or voxels without
using Matlab? It will be really helpful to me.
Thanks in advance
Sadia
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I tried to extract cc labels from aseg.auto.mgz file and extract the labels
subregions of cc from the cc.mgz file (cc.mgz contain the segmented
subregions of corpus callosum) using mri_vol2label command.
On Fri, Jun 21, 2019 at 11:23 PM Bruce Fischl
can you send us the full command line and screen output? Doug might have
an easy way to do it, but personally I would do it in matlab
cheers
Bruce
On Fri, 21 Jun
2019, Sadia Sheikh wrote:
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Thanks for your reply. I want to get the voxel
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Thanks for your reply.
I want to get the voxel coordinates of CC and its subregions. I tried
using the command mri_vol2label for cc subregions also. But still I am
getting the error message: found no voxels matching id 251.
What is the right command
Hi Sadia
we subdivide the cc into multiple components:
251 CC_Posterior0 0 64 0
252 CC_Mid_Posterior0 0 112 0
253 CC_Central 0 0 160 0
254 CC_Mid_Anterior 0 0 208 0
255
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Dear Freesurfer experts
How can I get the voxel coordinates of the segmented corpus callosum? I
tried using the command mri_vol2label and id of the corpus callosum as 192
as given in Freesurfer LUT,
but it gives an error: found no voxels matching id
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