[Freesurfer] Freeview fly through frames

External Email - Use Caution Dear Freesurfer users, I want to use the "Save Movie Frames..." in freeview to go through 305 frames of an overlay on a pial surface. When a select: Fly through Frame Start number 0 End number 305 Step size 1 I click "write" and it writes only

Re: [Freesurfer] SUIT FS-FAST

External Email - Use Caution Is available the segmentations for 601-628 to be used as seeds in functinal connectivity analysis by FS-FAST? Thanks Stefano > Il 10 novembre 2018 alle 21.04 std...@virgilio.it ha scritto: > > > Hi, > > I'd like to run an analysis of

Re: [Freesurfer] SUIT FS-FAST

We are currently working on including cerebellar parcellation in the FS recon pipeline, but this feature is not yet available. Independently, you could import and use the SUIT ROIs, but we do not have a pipeline for that. On Thu, 15 Nov 2018, std...@virgilio.it wrote: Is available the

Re: [Freesurfer] Problems with skull stripping

Hi Rosalia yes, editing and rerunning recon-all should work. Or update the brainmask.mgz with your own version if you want. We should detect that and retain it. cheers Bruce On Wed, 14 Nov 2018, Rosalia Dacosta Aguayo wrote: External Email - Use Caution Dear Free

Re: [Freesurfer] Problems with skull stripping

Hi Rosalia there are some tutorials on our website. And can you send us the recon-all.log where you have put a new brainmask.mgz into the subject's dir and it gets overwritten? That shouldn't happen thanks Bruce On Thu, 15 Nov 2018, Rosalia Dacosta Aguayo wrote: External Email -

Re: [Freesurfer] Problems with skull stripping

External Email - Use Caution Hi Bruce, I will send it you once I am in the lab. In relation to the tutorials, I know that there are tutorials and pdf documentation I have been consulting. But, just to start with editing, it would be helpful to see how another person is doing it

Re: [Freesurfer] Problems with skull stripping

External Email - Use Caution HI Bruce, I have to run recon-all -autorecon1, then substitute the brainmask for my brainmask, changing the brainmask from FS to brainmask.original.FS and labelling my betted image brainmask.mgz and then run recon-all -autorecon2 becuase if I do as

[Freesurfer] myelin group difference and pvr of thickness

External Email - Use Caution Hi, I would like to replicate an analysis I did with qdec but regressing out thickness at the vertex level. It’s a myelin group difference with age and left average myelin as nuisance factors. Q1/ should I use smoothed thickness maps or