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Yes, I have check, there was no problem.
As I see that it doesn't work for previous data that it worked for them
before, I suggest that it is because s.th. that happened for my computer,
finally, I free up some disk space, and it work, praise be to All
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Yes, it does. The process is quite complicated but explained in great detail in
a number of publications which are linked at the website. A rough overview is
given here: http://freesurfer.net/fswiki/FreeSurferAnalysisPipelineOverview
Best,
Tim
> On
Do you mean using different ROIs than in the aparc? If you want to use
the aparc, then that is done in the standard processing.
On 8/14/19 11:16 AM, miracle ozzoude wrote:
>
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>
> Hey Doug,
>
> If i want to do ROI surface base PET analysis using the method on
Can you send a command line and terminal output with the error?
On 8/14/19 9:38 AM, Daliah Ross wrote:
>
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>
> Hello,
>
> I have tried using just one of the arguments, but I'm still not
> getting my desired output. I'm not sure if I've explained my question
>
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mri_vol2surf --cortex --hemi lh --interp trilinear --o rest2.nii.gz
--out_type niigz --reg register.dat --projfrac-avg 0.500 --mov rest2.nii
--surfreg sphere.reg --trgsubject fsaverage
A source volume path must be supplied
Hey,
I'm running the abo
Then just do the standard PETsurfer processing
On 8/14/19 12:59 PM, miracle ozzoude wrote:
>
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>
> I want to use the aparc ROI. something similar to doing ROI surface
> base cortical thickness analysis where i used mri_annotation2label to
> extract the region
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Hi Freesurfer folks,
Has anyone seen this error before with the longitudinal pipeline:
Internal Error: Rotation should not scale.
Return code: 248
Thanks,
Dylan
On Tue, Aug 13, 2019 at 8:02 AM Dylan Nielson
wrote:
> Hi Freesurfer folks,
>
> I'm
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Dear Doug,
Thanks for your reply. I have used the same command in the recon-all.log
file (seen bellow), but I have a doubt for the highlighted part in the
command:
"mri_aparc2aseg --s SBJ1 --volmask --aseg aseg.presurf.hypos --relabel
mri/norm.mgz
sorry, all the previous emails did not make it into this one so I'm a
bit lost. Can you repost with the previous correspondence?
On 8/14/19 1:51 PM, Mahshid Fouladivanda wrote:
>
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>
> Dear Doug,
> Thanks for your reply. I have used the same command in the
>
I have not seen it before; I've cc'ed Martin in case he has seen it.
Have you checked the underlying data to make sure that there are no
artifacts, etc?
On 8/13/19 8:02 AM, Dylan Nielson wrote:
>
> External Email - Use Caution
>
> Hi Freesurfer folks,
>
> I'm running Freesurfer's longitu
Hi, To debug this, I would need the 4 input images and the command. Of course the error would need to also come up when using those images.Best MartinAm 14.08.2019 20:01 schrieb "Greve, Douglas N.,Ph.D." :I have not seen it before; I've cc'ed Martin in case he has seen it.
Have you checked the un
Not ssure what is happening. CAn you send the full terminal output.
Also, remove the --out_type flag. No need to include --surfreg
sphere.reg (but should not hurt anything).
On 8/14/19 12:37 PM, Pratik Kashyap wrote:
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>
> mri_vol2surf --cortex --hemi lh --
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I am having an issue processing some of my subjects through the HCP
pipeline and have no idea what this error means. If anyone could help out,
I'd appreciate it! Here is all the info:
1. Some (not all) of my subjects are getting a segmentation fault er
Hi guys,
I (and probably others) have noticed the aparc.a2009s label naming convention
has changed in recons starting from 6.0. “_and_” has become “&”, such as in
lh.G&S_subcentral. It is fixable, but it may become a bit confusing for those
who use fsaverage vs. individually segmented labels in
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