[Freesurfer] Error with mris_convert

External Email - Use Caution Hi, I manually made annotation files on an inflated surface of 40 subjects. The labels that makes these annotfiles are 13 in total but not present in all subjects every time, some can be missing depending on the brains surface morphology. I made

[Freesurfer] mris_average_surface fails

External Email - Use Caution Hi, I am trying to make an average subject but when the process reaches mris_average_surface it fails as seen below. My command was as follow: make_average_subject --out avgsubject --subjects spl_01 spl_02 spl_03 spl_04 spl_05 spl_06 spl_07 spl_08

Re: [Freesurfer] mris_average_surface fails

1 mudathirbakhit wheel972 Aug 12 2020 uninstall.sh > On Apr 6, 2021, at 22:30, Douglas N. Greve wrote: > > Do you have write permissions to > > /Applications/freesurfer/subjects > > Of not on a mac > > On 4/6/2021 6:39 AM, バキット・ムダシル wrote: >>

[Freesurfer] Meylin overlay

External Email - Use Caution Dear freesurfer experts, Is there a way to import the individual surface myelin maps from the human connectome project database to freesurfer and use them as overlays? Or can we create them in freesurfer? Mudathir

Re: [Freesurfer] Meylin overlay

boun...@nmr.mgh.harvard.edu>> on behalf of バキット・ムダシル > mailto:m-bak...@fmu.ac.jp>> > Reply-To: Freesurfer support list <mailto:freesurfer@nmr.mgh.harvard.edu>> > Date: Monday, March 15, 2021 at 10:18 PM > To: "freesurfer@nmr.mgh.harvard.edu <mailto:frees

Re: [Freesurfer] Meylin overlay

it has been fixed in the dev build. > > Matt. > > From: <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of バキット・ムダシル > mailto:m-bak...@fmu.ac.jp>> > Reply-To: Freesurfer support list <mailto:freesurfer@nmr.mgh.harvard.edu>> > Date: Tu

[Freesurfer] equivolumetric surfaces

External Email - Use Caution Dear freesurfer experts, I want to create an equivolumetric surfaces (using the tool from:

Re: [Freesurfer] equivolumetric surfaces

External Email - Use Caution Thanks Bruce! Mudathir > On Mar 20, 2021, at 1:07, Fischl, Bruce wrote: > > HI Mudathir > > Looks like mri_vol2surf doesn’t want the full path in the “surf” parameter – > just stuff after the “lh.”. > > Cheers > Bruce > > From:

Re: [Freesurfer] equivolumetric surfaces

and -surface-layer > and wb_command -volume-to-surface-mapping). > > Matt. > > From: <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of バキット・ムダシル > mailto:m-bak...@fmu.ac.jp>> > Reply-To: Freesurfer support list <mailto:freesurfer@nmr.mg

[Freesurfer] The cvs_avg35

External Email - Use Caution Hi, I was looking for any document describes how the cvs_avg35 and cvs_avg35_inMNI152 were made? Can you please send me a link or give me a brief about it please? I searched in the freesurfer wiki and here in the freesurfer folder but no success.

Re: [Freesurfer] mris_average_surface fails

Try pointer your > SUBJECTS_DIR to another location, eg, in your home directory > > On 4/6/2021 8:44 PM, バキット・ムダシル wrote: >> External Email - Use Caution >> >> I Think I have a permission. I ran chmod -R u+rwX to make sure, but the >> error wa

Re: [Freesurfer] Tract endpoint density map surface overlay

lt;mailto:freesurfer-boun...@nmr.mgh.harvard.edu> > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of バキット・ムダシル > mailto:m-bak...@fmu.ac.jp>> > Sent: Tuesday, March 30, 2021 11:02 PM > To: Freesurfer support list <mailto:Freesurfer@nmr.mgh

[Freesurfer] VB password

External Email - Use Caution Hi, I am attempting to run the Freesurfer Ubuntu virtual box but I need the “Developed” password. Is it possible to have it? Best Mudathir ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu