Hello Freesurfer's, I would like to generate the standard aparc.mgz statistics, but only for ROIs or for segments of an ROI that fall within the bounds of a mask. I've created the mask I want to use, have label files that correspond to the mask, have a masked version of the aparc.mgz, but I can't seem to figure out this final step.
I was planning to use mris_anatomical_stats but none of the adjustments I've tried have yielded output different from the standard aparc stats. Any help would be appreciated! Thank you!
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