Re: [Freesurfer] White matter surface don't change after editing

t. > I failed to upload subject through ftp, it's always appear an error > called "553 Could not create file", so I send a subject to you through > FileDrop. Can you receive a file named Cong2Bruce.zip? > Thanks again for your help. > > Best Wishes &g

Re: [Freesurfer] White matter surface don't change after editing

ways appear an error > called "550 Failed to change directory", so I send a subject to you through > FileDrop. Can you receive a file named Cong2Bruce.zip? > Thanks again for your help. > > Best Wishes > Cong Chen >> Date: Thu, 8 Sep 2016 10

[Freesurfer] Problem in upload file through ftp

. 553 Could not create file”. Could you give me some advices? Best Wishes Cong Chen___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only

Re: [Freesurfer] Problem in upload file through ftp

Hi Bruce full session is listed. Thank you very much. Best Wishes Cong BrainwaverdeMacBook-Pro:~ Brainwaver$ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit

[Freesurfer] mri_cvs_register quit for mris_resample: Command not found

Dear freesufer experts    I’m learning DTI image process according to steps in  FsTutorial/ Diffusion_DtiIntegration. In Spatial Normalization I need create a .m3z morph file through mir_cvs_register. I used command mri_cvs_register --mov subjectname --template cvs_avg35. But it always stop for mri

Re: [Freesurfer] mri_cvs_register quit for mris_resample: Command not found

Hi Z K The contents of build-stamp.txt are freesurfer-Darwin-lion-stable-pub-v5.3.0. Best Wishes Cong Chen > Date: Tue, 18 Oct 2016 11:09:20 -0400 > From: Z K > > > Hello, > > Can you provide me with the contents of your > /Applications/freesurfer/build-stamp

Re: [Freesurfer] Problem in upload file through ftp

ng2Bruce.zip 229 Entering Extended Passive Mode (|||37856|). 553 Could not create file. ftp> Best Wishes Cong Chen > Date: Mon, 17 Oct 2016 23:16:52 -0400 > From: Bruce Fischl > > Try changing dir into the source directory then do the put with only the file > name and no path &

Re: [Freesurfer] White matter surface don't change after editing

Hi Dear Bruce I have uploaded a subject named Cong2Bruce.zip through ftp. I can’t fix it by myself. Could you help me how to use expert options to get correct white matter and gray matter surface. Thank you very much. Best Wished Cong Chen > Date: Tue, 20 Sep 2016 10:45:30 -0400 (

Re: [Freesurfer] White matter surface don't change after editing

time. Thanks very much. Best Wishes Cong Chen > Date: Mon, 24 Oct 2016 23:22:58 -0400 > From: Bruce Fischl > > > Can you send us specific coordinates of things to look at? > >> On Oct 24, 2016, at 10:44 PM, Cong <3110103...@zju.edu.cn> wrote: >> >

[Freesurfer] problem in extract subcortical volume as ROI

Dear FSers I extracted left thalamus as ROI volume from aseg.mgz by this command: mri_binarize --i control001/mri/aseg.mgz --match 10 --o control001/roi/l_thal.nii I overlaid l_thal.nii to control001.nii in MRIcro software in a Macbook and it looks well. However, when I overlai

Re: [Freesurfer] problem in extract subcortical volume as ROI

having same coordinate with T1? Regards Cong > > From: Douglas Greve > > > no idea. you'll proably have to contact the MRIcro group > > > On 5/16/17 8:28 AM, Cong wrote: >> Dear FSers >>I extracted left thalamus as ROI volume from aseg.mgz by this

[Freesurfer] error in segmentHA_T2.sh

, and this T2.nii file works well in 6.0.0 version for segmenting hippocampal subregion. I pasted the wrong scripts, could you tell me what’s wrong? Thanks! Best Regards Cong BrainwaverdeMacBook-Pro:subjects Brainwaver$ segmentHA_T2.sh control004 control004/mri/T2.nii T2 1

Re: [Freesurfer] error in segmentHA_T2.sh

Dear Eugenio, Using full path solved the problem, thank you very much! Best Regards Cong > From: "Iglesias Gonzalez, Eugenio" > Subject: Re: [Freesurfer] error in segmentHA_T2.sh > To: Freesurfer support list > Message-ID: <2706b24c-1442-46b9-8a8b-15492520b...@