[Freesurfer] mri_vol2surf wrong hemisphere

f from Freesurfer v6.0.0 Any help would be greatly appreciated. Thank you! Best, Matthew Defenderfer Matthew K. Defenderfer B.S. | Graduate Research Assistant Graduate Biomedical Sciences | Neuroscience UAB | The University of Alabama at Birmingham Laboratory of Kristina Visscher, PhD Depa

[Freesurfer] mri_vol2surf wrong hemisphere

Any help would be greatly appreciated. Thank you! Best, Matthew Defenderfer Matthew K. Defenderfer B.S. | Graduate Research Assistant Graduate Biomedical Sciences | Neuroscience UAB | The University of Alabama at Birmingham Laboratory of Kristina Visscher, PhD Department of Neurobiology CIRC

[Freesurfer] mri_surf2surf on edited subjects

be appreciated. Thank you! -Matt Defenderfer Matthew K. Defenderfer B.S. | Graduate Research Assistant Graduate Biomedical Sciences | Neuroscience UAB | The University of Alabama at Birmingham Laboratory of Kristina Visscher, PhD Department of Neurobiology CIRC 111 | C: (865) 805-6389

Re: [Freesurfer] mri_surf2surf on edited subjects

The number of vertices match between the lh.sphere.reg and lh.pial. All of the timestamps are the same as well. I just tried this with v5.3 as well and the problem is the same. Thank you for helping with this! -Matt Defenderfer Matthew K. Defenderfer B.S. | Graduate Research Assistant

Re: [Freesurfer] mri_vol2surf wrong hemisphere

11:46:27 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_vol2surf wrong hemisphere How do you know what is right and left in the volume? On 12/01/2017 01:59 PM, Defenderfer, Matthew K wrote: > > Hi, > > I have a strange issue I can't figure out. I am currently trying t

[Freesurfer] T2 white matter surface refinement

External Email - Use Caution Hi, Looking through the documentation, there are extra options to include a T2 image to refine the pial surface boundary, but I was wondering if FreeSurfer can use a T2 in conjunction with a T1 to help refine the white matter/gray matter boundary?