[Freesurfer] mri_normalize update

/mri_normalize-20040311-Darwin.tar.gz Linux, 1263KB: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/mri_normalize-20040311-Linux.tar.gz To unpack, move the file you download to your freesurfer/ directory, cd there, and run tar zxvf filename. It will install bin/OS/mri_normalize. -- Kevin Teich

Re: [Freesurfer] tkmedit cpu usage

Is it normal for tkmedit to saturate the cpu when freesurfer is idle? Yes. This is fixed in the next version. -- Kevin Teich ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] scatter plot of multiple subjects thickness data in tksurfer

by getting the versions of both. Send me the output of the following commands: tksurfer --all-info head $FREESURFER_HOME/lib/tcl/tksurfer.tcl - Original Message - From: Kevin Teich [EMAIL PROTECTED] Date: Thursday, June 3, 2004 3:56 pm Subject: Re: [Freesurfer] scatter plot

Re: [Freesurfer] csurf problem on RedHat Linux EL2.15

while loading shared libraries: libglut.so.3: cannot open shared object file: No such file or directory I searched the web. Linux EL 2.15 has no libglut.so. I didn't find libglut.so for AMD64. Anybody has the similar problem? Any ideas? Thanks a lot. XJ Kang -- Kevin Teich

Re: [Freesurfer] tksurfer.static

it to me ? Thanks Marivi 100mb gratis, Antivirus y Antispam Correo Yahoo!, el mejor correo web del mundo ¡Tenelo ya! -- Kevin Teich ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Update for mris_register

FREESURFER_HOME/bin/OS/ directory. -- Kevin Teich ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Update mri_convert and mri_parse_sdcmdir

://surfer.nmr.mgh.harvard.edu/pub/dist/mri_convert-20041012-Darwin.tar.gz Linux: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/mri_convert-20041012-Linux.tar.gz -- Kevin Teich ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] problem to source FreeSurfer.cshrc

mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] license key

Hello, I received a license key by email, but cannot find where in the license it should go. Thanks, Margaret It should go in a file named .license and placed in your FREESURFER_HOME directory. Note the leading dot in the filename. -- Kevin Teich

Re: [Freesurfer] Problems installing freesurfer on Mac OS X (Darwin)

would be most welcome! Cathy ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list [EMAIL PROTECTED

Re: [Freesurfer] thresh_zstat1.img

. ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] ascii information file for a label

to save all the information you want, so, sorry, but no. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] ascii information file for a label

at that point. Isn't that right Kevin? Bruce On Thu, 6 Jan 2005, Kevin Teich wrote: I wonder if there is a way to save all information above (index, spherical coordinates, overlaid functionals values) into an ascii text file for all vertexes located within a certain label (patch)? The only thing close

Re: [Freesurfer] full surface cuts

Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Mac OSX Installation Questions

see this: http://surfer.nmr.mgh.harvard.edu/cgi-bin/fom?file=55 -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] error in the visualization of the parcellation

[ogden:freesurfer_package/freesurfer/subjects] wpark% could you please help me with this? thanks, wan -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] new binaries for tkmedit and tksurfer

] wpark% how can i solve this problem? thanks wan -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] new binaries for tkmedit and tksurfer

can't open library: /sw/lib/libtix8.1.8.4.dylib (No such file or directory, errno = 2) Command Finished any suggestion? thanks a lot, wan On Feb 14, 2005, at 2:15 PM, Kevin Teich wrote: Do you have BLT installed via Fink or FinkCommander? On Sun, 13 Feb 2005, Wan Park wrote: hi teich, i went

Re: [Freesurfer] Tksurfer Error

tksurfer: error while loading shared libraries: libglut.so.3: cannot open shared object file: No such file or directory. Do you have glut installed? If you are running a Red Hat box, you can check by: $ rpm -qa | grep glut Or just looking for libglut* in /usr/lib or /usr/local/lib. -- Kevin

Re: [Freesurfer] tkmedit problems

of these should work for you. Sorry! -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Freeglut problem

and still get the above error. I can see the libglut.so.3 library in /usr/local/lib and this is in my $PATH. Is /usr/local/lib in your /etc/ld.so.conf file? If not, add it, run ldconfig as root, and try again. -- Kevin Teich ___ Freesurfer mailing list

Re: [Freesurfer] static version for tksurfer

any GL related libraries? -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] where to download freesurfer-Linux-rh9-20050415.tar.gz

I jsut wonder where to download the freesurfer-Linux-rh9-20050415.tar.gz. Is this program release ? or someone can tell me where to download it. thanks It was a pre-release build. We're still working on a new public release. -- Kevin Teich

re: [Freesurfer] Newbie and some question

! Sports Rekindle the Rivalries. Sign up for Fantasy Football http://football.fantasysports.yahoo.com ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin Teich

Re: [Freesurfer] Problem filling labels

the dollar sign. Does this give you any clues? Thanks so much for helping me out with this. Xander Original message Date: Fri, 8 Jul 2005 13:17:45 -0400 (EDT) From: Kevin Teich [EMAIL PROTECTED] Subject: Re: [Freesurfer] Problem filling labels To: [EMAIL PROTECTED] I can't duplicate

Re: [Freesurfer] Problem filling labels

file to I tell Freesurfer to look at the correct tksurfer.tcl file? Thanks very much. Xander Original message Date: Fri, 8 Jul 2005 17:35:18 -0400 (EDT) From: Kevin Teich [EMAIL PROTECTED] Subject: Re: [Freesurfer] Problem filling labels To: Xander Meadow [EMAIL PROTECTED] Actually

Re: [Freesurfer] Re: tkregister problem

-sess-18404.tcl -- Segmentation fault Fri Jul 22 11:05:10 EDT 2005 -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo

Re: [Freesurfer] command line problems with tkmedit/tksurfer

/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Scripts in TkSurfer

, then creating a simple script to load and display an overlay file, then gradually add to it. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] unload segmentation?

when I've loaded the aseg in tkmedit, is it possible to unload it, or do I have to close tkmedit to view a volume without it again? Sorry, there's no way to unload a segementation volume. -- Kevin Teich ___ Freesurfer mailing list Freesurfer

Re: [Freesurfer] unload segmentation?

, is it possible to unload it, or do I have to close tkmedit to view a volume without it again? -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Editing labels

Does your data have a voxel resolution different than 1mm squared? -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Label colours

Can labels be loaded in different colours in tkmedit? No, sorry. The only thing you can do is convert your lables into a volume and load it as a segmentation volume. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

Re: [Freesurfer] .tcl file for tksurfer

setfile label /space/ventzl/1/users/SUBJECTS_DIR/mano002/label/dACC-rh.label The command to load a label is: labl_load fileName -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman

Re: [Freesurfer] Permission denied

Recently moved freesurfer from one system to another, but I am having trouble executing it. ./csurf: Permission denied. I have license in the right folder. Has anyone experienced the same problem. Make sure it is executable. Try: chmod a+x csurf -- Kevin Teich

Re: [Freesurfer] mri_watershed

___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin

Re: [Freesurfer] difference between dev version and the final stable version?

in results from version to version, but we're not there yet. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] freesurfer on debian

not include all the MNI tools (eg, n3 and mritotal). We're currently compiling against 1.4, if that helps you plan ahead. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Tksurfer tcl script LoadCurvature

? Actually, is there a reference document with all the script commands for tksurfer? Sorry, not really. But if you have something you want to try and do, let me know and I'll give you the commands for it. -- Kevin Teich ___ Freesurfer mailing list

Re: [Freesurfer] Script: setfile sulc

with: setfile sulc (and then the full path to the file). No error, but the files effects isn't being added. 2) Is it possible to save as tif from the script? (I use now: set rgb and save_rgb) Regards! Henrik Ormåsen IT analyselab, Psykologi -- Kevin Teich

Re: [Freesurfer] overlay thickness maps

subject lh inflated - got the gray surface next file-load overlay - $SUBJECTS_DIR/subject/surf choose lh.thickness * calculate identity map it redraws the surface but there is no colormap of the thickness -- Kevin Teich ___ Freesurfer mailing list

Re: [Freesurfer] tksurfer script

labl_load_color_table filename On Wed, Dec 28, 2005 at 04:06:08PM +1100, Fornito, Alexander wrote: Is there any way to load a colour look-up table through tksurfer scripting? I can't seem to see any options in the usage. -- Kevin Teich

Re: [Freesurfer] tksurfer script

Centre and Department of Psychology The University of Melbourne [EMAIL PROTECTED] -Original Message- From: Kevin Teich [mailto:[EMAIL PROTECTED] Sent: Wed 28/12/2005 11:40 PM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] tksurfer script

Re: [Freesurfer] Re: mk-fieldsign problems

___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

Re: [Freesurfer] tcl script - rotate and save graphics

for vector graphics or high resolution tiff or png images? -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] tcl script - rotate and save graphics

/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

RE: [Freesurfer] cortical labels

in the annotation file. Then you can save this segmentation as a new volume. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Re: tcl command to raise tksurfer window

how do we raise the tksurfer window into the foreground in a tcl script (in case it is obscured by other windows)? Sorry, there's no way to do that. There's also no way to set the backgroud color in the window. -- Kevin Teich ___ Freesurfer

Re: [Freesurfer] tksurfer - view - information - distance

the cursor is on point x with a value of, say 0.02 what is that the distance of? -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] color scale bar

/TkMeditGuide_2fTkMeditWorkingWithData_2fTkMeditFunctionalVolumes https://surfer.nmr.mgh.harvard.edu/fswiki/TkSurferGuide_2fTkSurferWorkingWithData_2fTkSurferOverlay -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

Re: [Freesurfer] Manual intervention for skull stripping

mouse button to a different task. You'll probably need to disable it for the X11 program. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] tksurfer overlay display

values off the display but the scale itself still shows negative values. If further clarity is needed please let me know. Thanks! -Anthony -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu

Re: [Freesurfer] fill stats

and which the negative contrast in sfa-sess or does it always take the first condition as being the positive contrast. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] (no subject)

, and the green cross will appear, but when I move to another location to set another control point, the first point disappears. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo

Re: [Freesurfer] How to disable jumping tool windows? Environment variables?

better when enlarged to full-screen size. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] tksurfer hemodynamic waveforms for group analysis

in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list

Re: [Freesurfer] tksurfer rendering offscreen

open_window or redraw commands are given? -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] printing out from tksurfer and tkmedit

files?? --- Bruce Fischl [EMAIL PROTECTED] wrote: but you could write a tcl script to do it automatically On Fri, 30 Jun 2006, Kevin Teich wrote: How can I can I print out the display images from tksurfer and tkmedit other than manually saving them into tiff

Re: [Freesurfer] tkmedit crashes/freezes

/usr/lib/qt-3.3 TCLLIBPATH /pkg/brainmap/freesurfer/lib/tcltktixblt/lib FSL_DIR /pkg/brainmap/freesurfer/fsl [EMAIL PROTECTED] ~]$ which tkmedit /pkg/brainmap/freesurfer/bin//tkmedit cd /disk/k2/freesurfer/neuromorph_v1_flash/ Thanks in advance. -- Kevin Teich

Re: [Freesurfer] tksurfer marking nodes on opposite side of brain

to Undo. Do I need to enalbe the Undo feature somewhere? I'm running FS 3.0.3 centos4. Thank you very much, Johannes -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] tksurfer time course script help

correction). set gbPreStimOffset 0|1 e.g. set gbPreStimOffset 1 -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] functional overlay onto the occiptal patch with fieldsign

Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Head Points data files

channels. I'd like to co-register my dipole locations with FreeSurfer's aseg+aparc.mgz to efficiently localize dipoles x ROIs. I have already co-registered index points and headshape files to each subject's aMRI within 4D's software. Any advice is greatly appreciated! Jenifer -- Kevin

Re: [Freesurfer] min and max voxel values in tkmedit?

Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Complex value color scales.

. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Complex value color scales.

? Or generally how to pass in an arbitrary color map? Thanks again Greg On 3/22/07 4:27 PM, Kevin Teich [EMAIL PROTECTED] wrote: I am trying to display phase information on the cortical surface using tksurfer, but am running into problems with the scale bar. Specifically when plotting

Re: [Freesurfer] Manuals and Scuba

1.Where can I find more information regarding SCUBA? https://surfer.nmr.mgh.harvard.edu/fswiki/Scuba 3. What is the newest version of the FreeSurfer Manual and where can I find it The freesurfer wiki at that address is our current live documentation. -- Kevin Teich

Re: [Freesurfer] Scripting: Feeding arguments and variables to script?

that is in a relative path (like writing a log to the current directory). -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] label ID in tksurfer

I was wondering if there is any way to have it automatically identify the labels in the image, say by printing the label-id next to the actual label outline. Sorry, no. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] tkmedit question

on the shell? -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] tksurfer - list overlay values inside a label

-- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] quick scatterplot label question

label. I assume that I need to set this beforehand in the fsgd file but I wasn't sure how. Thanks in advance. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] can't load sig.mgh in dev tksurfer

___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo

Re: [Freesurfer] Changing the color in Edit Segmentation tool

different structures at random and the color of the editing remains grey). Any ideas? Jared -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Changing the color in Edit Segmentation tool

source is set at Segmentation (under Configure Segmentation Brush)--I imagine that's what you are referring to when you say target layer. Kevin Teich wrote: Are you sure the Target Layer is set to the segmentation volume layer? And that that layer's color map type is set to LUT? On Thu

Re: [Freesurfer] how to import private color scales

for such a file? -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] long delay before tksurfer launches

. When I strace it, there is trace information to show initially, and then there is the text output I mentioned above, but during the waiting period there is no output from strace at all. Thanks in advance, Rob -- Kevin Teich ___ Freesurfer mailing

Re: [Freesurfer] linear opaque threshold

threshold to linear opaque mode in tksurfer using TCL commands? I looked at the documentation, and I didn't see a method explicitly for that purpose, but maybe there is some way to specify that option. Thanks, Rob -- Kevin Teich ___ Freesurfer

Re: [Freesurfer] problem to save images

the file with photoshop in windows, and it was total black when I opened it with adobe illustrator in windows or GIMP in Linux. Please tell me how to save the images so that I can open them with photoshop. Thank you in advance, XIn -- Kevin Teich

Re: [Freesurfer] editing labels

the correct label in the correct hemisphere), nothing is saved when I pull up the image again. I have tried to convert the labels to annot files using mris_label2annot, but this isn't working either. I'm not sure what I am doing incorrectly. Thanks, sarah -- Kevin Teich

Re: [Freesurfer] xform avesurf- subject

remember this can be done, I have to load a transform I think. looked through the docs and mail archive but perhaps I was not thinking of the best key to search the archive. thankx -- Kevin Teich ___ Freesurfer mailing list Freesurfer

Re: [Freesurfer] using tkmedit

/listinfo/freesurfer -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] error: no gl window open

this issue? My system: HP NC8430 laptop (ATI X1600 video card) Fedora 6 (X86_64) Freesurfer V4.0 Thanks in advance, Xiangchuan Chen -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu

Re: [Freesurfer] Re: Error: Cannot allocate memory

-- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] multiple surface overlays

overlay at a time from the command line? (something like: tksurfer subject hemi surface -overlay1 ??? -overlay2 ??? overlay3 ???) Does this require scripting w/ tksurfer? Cameron -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] New UserContributions page on the wiki

page, or here: http://surfer.nmr.mgh.harvard.edu/fswiki/GettingAccess -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer