hmmm, I don't. Does your disk have space on it? Can you try rerunning the
last command in the recon-all.cmd file and see if it completes?
Bruce
On Sun, 10
Jun 2018, Lee, Seonjoo wrote:
>
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Hi Bruce,
recon-all did not run, and I could not figure out the problem. Do you have any
clue what could be? The log file does not tell anything…
The command was the most simplest one (using only t1).
If you need more information to figure out the
Dear Freesurfers,
I had the following error message while I was running recon-all:
Reading curvature file
/Data/MRI/002_S_1155-S178671/surf/lh./Data/MRI/002_S_1155-S178671/surf/lh.white.K
MRISreadCurvature: could not open
Data/MRI/002_S_1155-S178671/surf/lh./Data/MRI/
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Lee, Seonjoo
mailto:sl3...@cumc.columbia.edu>>
Sent: Wednesday, July 11, 2018 8:26
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Dear Freesurfer experts,
I tried to run preproc-sess but did not have much luck to make it work.
I converted resting fmri file into .nii, and I created the following directory
structure and it’s stored under /data/sub1/rest/001/fMRI.nii:
/data
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I tired to use QA tools for freesurfer version6, but did not have much success.
Is anyone know how to tweak QA tools for freesurfer version 6?
Thank you.
-Seonjoo Lee
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Dear Freesurfer,
Could you help me to resolve this error? I looked up the previous postings, but
the recommendation (copying files in the same folder etc.) did not help.
Thank you.
$ recon-all -base template -tp 002_S_0295_S32678 -tp
