hyoung
>
> can you tar and gzip the entire subject directory tree and upload that?
>
> thanks
> Bruce
>
> On Tue, 7 Feb 2017, Juhyoung Ryu wrote:
>
>> I uploaded 3 set of T1.nii and T2.nii files for 3 example subjects.
>> You can get subject information here
ns in to our ftp site?
>
> cheers
> Bruce
> On Mon, 6 Feb 2017, Juhyoung Ryu wrote:
>
>>
>> Hi FS developers,
>>
>> I received errors in one of steps in recon-all.
>> I analyzed 111 individual subjects' T1 data using same method, but there are
>> errors
> Bruce
>
>
> On Thu, 9 Feb 2017, Juhyoung Ryu wrote:
>
>> Hi Bruce,
>> I installed FREESURFER with version 6.0 for your recommendation and I got an
>> error:
>> mri_em_register: could not open GCA
>> /Applications/freesurfer/average/RB_all_2008-03-2
eturn?
>
>> On Feb 8, 2017, at 10:54 PM, Juhyoung Ryu <jh67753...@gmail.com> wrote:
>>
>> Yes, I set FREESURFER_HOME variable as '/Applications/freesurfer’, which I
>> installed freesurfer v6.
>> I attached recon-all.log file below.
>> I can see 'buil
t; First, can you please paste this kind of thing as text into your email
> instead of taking snapshots? That makes things easier for us.
>
> Second, why are you telling recon-all not to do the inflation with
> -noinflate2? That is why it can't find the inflated surface.
>
> cheers
suggestions to run freesurfer?
Thank you in advance!
Juhyoung
> On Jul 28, 2017, at 8:45 AM, Juhyoung Ryu <jh67753...@gmail.com> wrote:
>
> Hi Bruce,
>
> Yes I’m using v6.0.
> I found that there is -hires flag in version 6
> (https://surfer.nmr.mgh.harvard.edu/
Hi experts,
I'm trying to surface reconstruction using high-resolution T1 and T2 data
using freesurfer version 6
So I typed like this:
recon-all -subject ${subjName} -i T1_bfc.nii -hires -T2 T2_bfc.nii -T2pial
-all
and that excited with errors like this;
so much,
Juhyoung
On Mon, Aug 7, 2017 at 11:18 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
> Hi Juhyoung
>
> can you just cut and paste the text into the email instead of a screen
> shot?
>
> thanks
> Bruce
> On Mon, 7 Aug 2017, Juhyoung Ryu wrote:
&g
l -all -cw256
Thanks,
Juhyoung
> On Jul 28, 2017, at 2:19 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
>
> Hi Juhyoung
>
> what FS version are you running with? If 6.0 you want to include the -highres
> flag
>
> cheers
> Bruce
>
>
>
> On Thu
gt; wrote:
>
> Hi Juhyoung
>
> I think it's because you have -cw256. Since it comes after -hires it
> overrides it and tells recon-all to crop to a 256 volume size
>
> cheers
> Bruce
> On Fri, 4 Aug 2017, Juhyoung Ryu wrote:
>
>> Dear FS experts,
>> I wa
> Begin forwarded message:
>
> From: juhyoung Ryu <jh67753...@gmail.com>
> Subject: Re: [Freesurfer] recon-all error: ERROR! FOV=272.000 > 256
> Date: August 8, 2017 at 8:27:33 AM GMT+9
> To: Freesurfer support list <
less with mri_convert --crop
> and --crop-size.
>
> On 8/28/17 9:50 PM, Juhyoung Ryu wrote:
>> Hi FS team,
>>
>> I encountered recon-all error and I want to solve the problem or find
>> alternative method.
>> As you can see forwarded mail thread, I aske
External Email - Use Caution
Hi all,
I’d like to upsampling anatomical ROI data, what i created using ribbon file,
to the functional resolution.
As the anatomical and functional data were aligned, I need only re-slice
processing except for coregistration.
I tried upsampling
eve, Douglas N.,Ph.D.
> wrote:
>
> Use bbregister to create the register.dat file. Run it with --help to
> get docs on how to use it.
>
> On 4/15/2019 7:51 AM, Juhyoung Ryu wrote:
>> External Email - Use Caution
>>
>> Hi all,
>>
>>
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