External Email - Use Caution Dear Freesurfer devs,
We are considering segmenting with the Freesurfer 6 dev version the hippocampus, the amygdala and the thalamus of several subjects who have already done the recon-all. Since we have a T1 image and T2 image with smaller voxel size, we have thought about using the *mode B: segmetation with an additional scan* as explained in the freesurfer webpage. In addition to voxel size, both images have slight differences in acquisition parameters. Taking into account this situation we have these questions: - Since there are other slightly different parameters between image T1 and T2 in addition to voxel size (e.g. matrix size), it is correct to use B mode with additional scan or we should use multispectral segmentation? - Is it necessary to make some previous modification on some image before running the script segment_HA.sh (e.g. coregister both images)? - Is there a quality control that you can recommend after segmenting these structures? Thanks for your help! Best regards,
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
