Re: [Freesurfer] Matlab 2016b and localGI

2017-08-11 Thread Chris Watson
Hi, I took a look at this and saw that the error comes from the "getmatlab" script ($FREESURFER_HOME/fsfast/bin/getmatlab). It is a CSH script, which I thought might be the issue. Specifically, the script checks for the existence of matlab by (unsurprisingly) set MATLAB = `which matlab`; On Dr.

Re: [Freesurfer] Matlab 2016b and localGI

2017-08-11 Thread Alan Francis
Hi Jennifer - Ostensibly your pathways and environment variables look correct. I ran into this problem once before, so I changed from BASH to the enhanced C shell and it worked. You may want to try that. All you need to do is to exit out of bash and set the environment in tcsh and it could work.

[Freesurfer] Matlab 2016b and localGI

2017-08-10 Thread Juranek, Jenifer
Hi, Hope someone can identify my user error...I've listed below key bits of info (system info, cmdline and error message, echo $PATH, cat .bashrc, cat startup.m). Really appreciate someone taking a look and walking me through a solution to my error? Many Thanks! Jenifer 1) Running Freesurf