Re: [Freesurfer] Unknown Label in following postprocessing with mne-python

2018-02-26 Thread Douglas N Greve
I'm not sure I understand what you are asking about. Do you mean in the 
aseg.mgz or the aparc+aseg.mgz? Unknown is usually just stuff outside of 
the head, but sometimes can be in the head (eg, with aparc+aseg.mgz).


On 02/22/2018 08:51 AM, Daniel van de Velden wrote:
> Dear fellow colleagues,
>
>
> in my study I use volumetric source spaces. In the process of creating
> them, I decided to identify all available volumelabels FreeSurfer
> "recognized" in the given mri image.
>
> Every single subject inherits, despite all other volumelabels, a
> volumelabel called "Unknown". In an 3D representation of those "unknown"
> volumelabel coordinates I opine those points could also be part of other
> volumelabels like cerebral cortex or white matter.
>
> Would you please give me a detailed explanation of the origin of this
> 'Unknown' label? Specifically in respect to the fsaverage "subject".
>
>
> Best regards,
>
> Daniel van de Velden
>
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>
>

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[Freesurfer] Unknown Label in following postprocessing with mne-python

2018-02-22 Thread Daniel van de Velden
Dear fellow colleagues,


in my study I use volumetric source spaces. In the process of creating 
them, I decided to identify all available volumelabels FreeSurfer 
"recognized" in the given mri image.

Every single subject inherits, despite all other volumelabels, a 
volumelabel called "Unknown". In an 3D representation of those "unknown" 
volumelabel coordinates I opine those points could also be part of other 
volumelabels like cerebral cortex or white matter.

Would you please give me a detailed explanation of the origin of this 
'Unknown' label? Specifically in respect to the fsaverage "subject".


Best regards,

Daniel van de Velden

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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.