You can add --aparc+aseg (hit 'c' to toggle on and off), alternatively
You can use tkregsiterfv (same command arguments) but add -aparc+aseg
-seg-outline
You will need to use the lta registration file (not the .dat)
On 3/29/2021 6:13 PM, Nasiriavanaki, Zahra wrote:
Dear Freesurferers,
I have
Dear Freesurferers,
I have a question and I appreciate it much if you could please reply.
I need to know how to check subcortical functional to anatomical registration.
I know for checking the cortical registration I can use the below command:
tkregister2 --s $subj --mov template.nii.gz
Hi David, please post to the list ... answers below
On 11/13/2017 01:48 PM, David Beeler wrote:
> Hi Doug, really helpful thanks!
> So if I want all the motion corrected functional data across runs to be
> aligned with a downsampled version of my anatomical, is it better to run
> preproc-sess
On 11/8/17 5:57 PM, David Beeler wrote:
Hi freesurfer people,
I'm trying to understand preprocessing a little better, especially
registration of functional data to anatomical space. I am currently
running everything in the volume, doing motion correction per-run and
then pooling all the
Hi freesurfer people,
I'm trying to understand preprocessing a little better, especially registration
of functional data to anatomical space. I am currently running everything in
the volume, doing motion correction per-run and then pooling all the runs in
the session together for the first
