Jin, David S. has shared a OneDrive for Business file with you. To view it,
click the link below.
<https://partnershealthcare-my.sharepoint.com/personal/david_jin_mgh_harvard_edu/Documents/Attachments/alreadyexists_recon-all.log>
[https://r1.res.office365.com/owa/prem/images/dc-generic_20.png]<https://partnershealthcare-my.sharepoint.com/personal/david_jin_mgh_harvard_edu/Documents/Attachments/alreadyexists_recon-all.log>
alreadyexists_recon-all.log<https://partnershealthcare-my.sharepoint.com/personal/david_jin_mgh_harvard_edu/Documents/Attachments/alreadyexists_recon-all.log>
Hi,
The command submitted was:
recon-all -autorecon2 -autorecon3 -subjid D31223 -openmp 4
The screen output was:
ERROR: /home/david/Desktop/JSS_FSnew/test_8core/D31223/label/lh.BA_exvivo.annot
already exists
Linux locke 3.19.0-33-generic #38~14.04.1-Ubuntu SMP Fri Nov 6 18:17:28 UTC
2015 x86_64 x86_64 x86_64 GNU/Linux
I have attached recon-all.log as "alreadyexists_recon-all.log"
Many thanks,
David
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Bruce Fischl
Sent: Wednesday, March 7, 2018 2:09:35 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] lh.BA_exvivo.annot Already Exists Error
Hi David
can you send us the full command line, screen output and recon-all.log?
cheers
Bruce
On
Wed, 7 Mar 2018, Jin, David S. wrote:
>
> Hi,
>
> On our machine, with FS6, when we try to run recon-all, FS throws an error of
> "lh.BA_exvivo.annot
> already exists" . However, upon deleting lh.BA_exvivo.annot, it still gives
> the same error. Has
> anybody else encountered this?
>
>
>
>
>
> Many thanks,
>
> David
>
>
>
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