Re: [Freesurfer] Flip left-right orientation command

2020-03-20 Thread Douglas N. Greve
Have you tried using LAS ? On 3/19/2020 12:48 PM, Miguel Ángel Rivas Fernández wrote: External Email - Use Caution Dear Douglas, In these emails I asked to you how to flip the left-right orientation of an image in PIL orientation and you recommend to me this command mri_convert

Re: [Freesurfer] Flip left-right orientation command

2020-03-19 Thread Miguel Ángel Rivas Fernández
External Email - Use Caution Dear Douglas, In these emails I asked to you how to flip the left-right orientation of an image in PIL orientation and you recommend to me this command mri_convert --in_orientation PIR t1_flip.nii t1_flip_flip.nii All have worked fine but now I am

Re: [Freesurfer] Flip left-right orientation command

2020-02-14 Thread Miguel Ángel Rivas Fernández
External Email - Use Caution Yes, it works!. Thank you so much. El vie., 14 feb. 2020 a las 17:22, Douglas N. Greve () escribió: > You can try, > mri_convert --in_orientation PIR t1_flip.nii t1_flip_flip.nii > but I'm not promising anything > > On 2/14/2020 11:03 AM, Miguel

Re: [Freesurfer] Flip left-right orientation command

2020-02-14 Thread Douglas N. Greve
You can try, mri_convert --in_orientation PIR t1_flip.nii t1_flip_flip.nii but I'm not promising anything On 2/14/2020 11:03 AM, Miguel Ángel Rivas Fernández wrote: External Email - Use Caution Dear Douglas, My image is in the correct orientation. The reason is that am using a

Re: [Freesurfer] Flip left-right orientation command

2020-02-14 Thread Miguel Ángel Rivas Fernández
External Email - Use Caution Dear Douglas, My image is in the correct orientation. The reason is that am using a software to detect brain lesions that only works in left hemisphere and my subject have the lesion in the right hemisphere. I tried it with the following command and

Re: [Freesurfer] Flip left-right orientation command

2020-02-14 Thread Douglas N. Greve
Is the image in the wrong orientation (ie, is it not truly in PIR) or do you want to change the orientation? doing a left-right swap is more than changing the orientation On 2/11/2020 4:06 PM, Miguel Ángel Rivas Fernández wrote: External Email - Use Caution Dear Freesurfer experts,