Re: [Freesurfer] How to Create Cortex Parcellation Using "mri_aparc2aseg"?

2019-08-15 Thread Mahshid Fouladivanda
External Email - Use Caution Dear Doug, Here is the emails: Message: 6 Date: Fri, 2 Aug 2019 01:55:34 + From: "Greve, Douglas N.,Ph.D." Subject: Re: [Freesurfer] How to Create Cortex Parcellation Using "mri_aparc2aseg"? To: "freesurfer@nmr.

Re: [Freesurfer] How to Create Cortex Parcellation Using "mri_aparc2aseg"?

2019-08-14 Thread Greve, Douglas N.,Ph.D.
sorry, all the previous emails did not make it into this one so I'm a bit lost. Can you repost with the previous correspondence? On 8/14/19 1:51 PM, Mahshid Fouladivanda wrote: > > External Email - Use Caution > > Dear Doug, > Thanks for your reply. I have used the same command in the >

Re: [Freesurfer] How to Create Cortex Parcellation Using "mri_aparc2aseg"?

2019-08-14 Thread Mahshid Fouladivanda
External Email - Use Caution Dear Doug, Thanks for your reply. I have used the same command in the recon-all.log file (seen bellow), but I have a doubt for the highlighted part in the command: "mri_aparc2aseg --s SBJ1 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz

Re: [Freesurfer] How to Create Cortex Parcellation Using "mri_aparc2aseg"?

2019-08-01 Thread Greve, Douglas N.,Ph.D.
If you look in the recon-all.log file for any subject, you will see a mri_aparc2aseg command line. YOu can use that specifying your annot and the new output name. On 8/1/2019 4:58 PM, Mahshid Fouladivanda wrote: External Email - Use Caution Dear experts, I have a segmentation file of