Hi Miao
try using mris_fill instead. I think it defaults to 0.5mm resolution, but
this can be changed with -r <res>
cheers
Bruce
On Thu, 5 Sep 2019, Jingya Miao wrote:
External Email - Use Caution
Hello Freesurfer Developers,
I am trying to generate a solid volume out of the lh/rh.pial-outer-smoothed
file.
I was able to get just the surface in .nii format by using:
mri_surf2vol --hemi lh --surf pial-outer-smoothed --mkmask --reg
mri/register.dat --o surfsmoothed.nii --template mri/T1.nii
--subject BerA
I also attempted to use --fillribbon
mri_surf2vol --surfval
$SUBJECTS_DIR/Berger_Andrew/surf/lh.pial-outer-smoothed
--fillribbon --reg mri/register.dat --o smoothedfill.nii
--template T1.nii --subject BerA
gdiagno = -1
ERROR: cannot recognize the type of
/Users/mah.ali/freesurfer/subjects/Ber
A/surf/lh.pial-outer-smoothed
I am wondering what would be a good way to generate a solid volume out of the
pill-outer-smoothed files.
Thank you,
Miao
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