try setting your SUBJECTS_DIR to the full path instead of "./" On 12/4/19 2:48 PM, Rellick, Stephanie wrote: > > External Email - Use Caution > > Hello, > > I am having an issue with the mri_label2label command. > > What I did was mri merge of the BA4 a and p labels for each hemisphere > from the fsaverage files, ending up with a lh.BA4.label and a > rh.BA4.label. > > I am wanting to now map the fsaverage lh.BA4.label and rh.BA4.label > onto the individual subjects into my study, and was told that to do > this, I needed to create those same labels using the BA4 a & p labels > in the individual subject label file, and then run the command > mri_label2label. > > This is the command that I am running: > > mri_label2label --srcsubject fsaverage --srclabel lh.BA4.label > --trgsubject SRMC01_1.long.SRMC01 --trglabel lh.BA4.label --regmethod > surface --hemi lh > > > And it keeps giving me this error message: > > > srclabel = lh.BA4.label > > srcsubject = fsaverage > > trgsubject = SRMC01_1.long.SRMC01 > > trglabel = lh.BA4.label > > regmethod = surface > > > srchemi = lh > > trghemi = lh > > trgsurface = white > > srcsurfreg = sphere.reg > > trgsurfreg = sphere.reg > > usehash = 1 > > Use ProjAbs= 0, 0 > > Use ProjFrac = 0, 0 > > DoPaint 0 > > > SUBJECTS_DIR./ > > FREESURFER_HOME /Applications/freesurfer > > Loading source label. > > Found 7403 points in source label. > > Starting surface-based mapping > > Reading source registration > > .//fsaverage/surf/lh.sphere.reg > > Rescaling ...original radius = 100 > > Reading target surface > > .//SRMC01_1.long.SRMC01/surf/lh.white > > MRISread(.//SRMC01_1.long.SRMC01/surf/lh.white): could not open file > > No such file or directory > > ERROR: could not read .//SRMC01_1.long.SRMC01/surf/lh.white > > > The lh.white file is definitely in the surface folder under that > subject so I'm not sure why is says there is no such file or directory. > > > Any help would be greatly appreciated!! > > > Stephanie > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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