When you set a variable to a list of multiple things, you need parentheses
around them (see the example config file for this). My recommendation to make
things simpler for yourself is to remove any variables where you are just using
the default settings, and only keep the ones where you define where your input
files are (see also tutorial for this).
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Benxamin varela l?pez
<benxa...@gmail.com>
Sent: Wednesday, December 4, 2019 2:24 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] TRACULA QUESTION:CONFIGURATION FILE ISSUE
External Email - Use Caution
Dear Freesurfers experts,
I'm a beginner in the diffusion imaging preprocessing. I was following the
freesurfer/dti tutorial with my own data when i get stuck in the trac-all step.
I have created the configuration files trying to follow the tutorial
instructions and when I tried to run the trac-all command I get the following
error:
pcpb3846:4220 lab1-rmn$ trac-all -prep -c $TUTORIAL_DATA/outputs/dmrirc.tutorial
set: Variable name must contain alphanumeric characters.
ERROR: must specify either one number of control points
ERROR: or as many numbers as pathways
You can find my configuration file in attached. Any help would be very
appreciated.
Thank in advance.
Best regards,
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