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It seems to work. Thanks a lot !
Jessica BOURGIN
Laboratoire de Psychologie et Neurocognition
CNRS UMR 5105
Université Savoie Mont Blanc (USMB)
BP 1104
73011 Chambery Cedex France
___
Freesurfer
August 2019 at 11:58
To: freesurfer
Subject: Re: [Freesurfer] Transform hippocampal/amygdala segmentation to
another space
External Email - Use Caution
Dear Juan Eugenio,
Thank you for these precisions.
Following the guidelines of FSL, I computed the following sequence on my
structural
External Email - Use Caution
Dear Juan Eugenio,
Thank you for these precisions.
Following the guidelines of FSL, I computed the following sequence on my
structural image :
bet my_structural my_betted_structural
flirt -ref ${FSLDIR}/data/standard/MNI152_T1_2mm_brain -in
(MIT)
http://www.jeiglesias.com
From: on behalf of Jessica Bourgin
Reply-To: Freesurfer support list
Date: Wednesday, 7 August 2019 at 13:44
To: freesurfer
Subject: Re: [Freesurfer] Transform hippocampal/amygdala segmentation to
another space
External Email - Use Caution
Dear Juan
External Email - Use Caution
Dear Juan Eugenio,
Thanks a lot for your quick response.
I don't understand what you mean exactly by "propagate the hard segmentations".
And when you say to register the subjects to the Brainnetome, do you mean
replace the atlas used by
Dear Jessica,
There is no intensity image associated with the atlases, so this is not trivial.
I guess you could register your subjects to the atlas, and propagate the hard
segmentations?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
