help me how to use expert options to get correct white
matter and gray matter surface. Thank you very much.
Best Wished
Cong Chen
Date: Tue, 20 Sep 2016 10:45:30 -0400 (EDT)
From: Bruce Fischl
Subject: Re: [Freesurfer] White matter surface don't change after
editing
Hi Cong
we are exp
hen
>>
>>> Date: Tue, 20 Sep 2016 10:45:30 -0400 (EDT)
>>> From: Bruce Fischl
>>> Subject: Re: [Freesurfer] White matter surface don't change after
>>> editing
>>>
>>> Hi Cong
>>>
>>> we are experiencing s
expert options to get correct
> white matter and gray matter surface. Thank you very much.
>
> Best Wished
> Cong Chen
>
>> Date: Tue, 20 Sep 2016 10:45:30 -0400 (EDT)
>> From: Bruce Fischl
>> Subject: Re: [Freesurfer] White matter surface don't change after
>
EDT)
> From: Bruce Fischl
> Subject: Re: [Freesurfer] White matter surface don't change after
> editing
>
> Hi Cong
>
> we are experiencing serious disk problems at Martinos, so the ftp site is
> down.
>
> Try changing the values for mri_segment also. No
Hi Cong
we are experiencing serious disk problems at Martinos, so the ftp site is
down.
Try changing the values for mri_segment also. Note that what you are
seeing are NOT topological defects as mris_make_surfaces preserves the
input topology whatever its settings. Make sure to look in 3D an
> Hi Dear Bruce
> Thanks very much for your reply, I improved min_border_white to 100,
> the lh.white line shrinks but still is far out in some area, and I notice
> many topological defect appears as a result.
> I failed to upload subject through ftp, it's always appear an error
> ca
> On Sep 10, 2016, at 1:15 AM, 3110103...@zju.edu.cn wrote:
>
> Hi Dear Bruce
> Thanks very much for your reply, I improved min_border_white to 100,
> the lh.white line shrinks but still is far out in some area, and I notice
> many topological defect appears as a result.
> I failed
Hi Cong
you could try using expert options to modify the mris_make_surfaces
parameters. It looks like you white surface is too far out. Try
increasing min_border_white and/or increasing max_gray. If you can't get it
working feel free to upload the entire subject dir and we will take a look
c
