Re: [Freesurfer] recon-all at native resolution

2019-10-28 Thread Alexopoulos, Dimitrios
-boun...@nmr.mgh.harvard.edu On Behalf Of Greve, Douglas N.,Ph.D. Sent: Monday, October 28, 2019 9:22 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all at native resolution Yes, this is the issue we have with the high res stream in v6. As I said, you can use the patch

Re: [Freesurfer] recon-all at native resolution

2019-10-28 Thread Greve, Douglas N.,Ph.D.
gt; mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> > On Behalf Of Greve, Douglas N.,Ph.D. > Sent: Thursday, October 24, 2019 5:37 PM > To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] recon-all at native resolution >

Re: [Freesurfer] recon-all at native resolution

2019-10-25 Thread Alexopoulos, Dimitrios
] [cid:image002.png@01D58B27.A63D2C70] -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Greve, Douglas N.,Ph.D. Sent: Friday, October 25, 2019 11:17 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all at native resolution

Re: [Freesurfer] recon-all at native resolution

2019-10-25 Thread Greve, Douglas N.,Ph.D.
> > Is my thinking correct? If so, which flag is best? > > Jim > > > -Original Message- > From: freesurfer-boun...@nmr.mgh.harvard.edu > On Behalf Of Greve, Douglas N.,Ph.D. > Sent: Thursday, October 24, 2019 5:37 PM > To: freesurfer@nmr.mgh.harvard.edu > S

Re: [Freesurfer] recon-all at native resolution

2019-10-24 Thread Alexopoulos, Dimitrios
On Behalf Of Greve, Douglas N.,Ph.D. Sent: Thursday, October 24, 2019 5:37 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all at native resolution You mean the surfaces using -hires look fine? If so, then continue to use -hires On 10/24/19 6:32 PM, Alexopoulos, Dimitrios

Re: [Freesurfer] recon-all at native resolution

2019-10-24 Thread Greve, Douglas N.,Ph.D.
s N.,Ph.D. > Sent: Thursday, October 24, 2019 5:06 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] recon-all at native resolution > > oh, sorry, yes it is. The surfaces are placed on the high res volumes, but > the aseg will be at 1mm. If you need the aseg

Re: [Freesurfer] recon-all at native resolution

2019-10-24 Thread Alexopoulos, Dimitrios
in this scenario? Thx. -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Greve, Douglas N.,Ph.D. Sent: Thursday, October 24, 2019 5:06 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all at native resolution oh, sorry, yes it is. The surfaces are placed

Re: [Freesurfer] recon-all at native resolution

2019-10-24 Thread Greve, Douglas N.,Ph.D.
gt; Is this expected when running -conf2hires? > > Jim > > -Original Message- > From: freesurfer-boun...@nmr.mgh.harvard.edu > On Behalf Of Greve, Douglas N.,Ph.D. > Sent: Tuesday, October 15, 2019 11:54 AM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer

Re: [Freesurfer] recon-all at native resolution

2019-10-24 Thread Alexopoulos, Dimitrios
. Is this expected when running -conf2hires? Jim -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Greve, Douglas N.,Ph.D. Sent: Tuesday, October 15, 2019 11:54 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all at native resolution better to use

Re: [Freesurfer] recon-all at native resolution

2019-10-15 Thread Alexopoulos, Dimitrios
External Email - Use Caution Thanks. Will give it a try. -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Greve, Douglas N.,Ph.D. Sent: Tuesday, October 15, 2019 11:54 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all

Re: [Freesurfer] recon-all at native resolution

2019-10-15 Thread Greve, Douglas N.,Ph.D.
better to use a patch I created for the HCP, see https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/hcp/readme On 10/15/19 12:13 PM, Alexopoulos, Dimitrios wrote: > > External Email - Use Caution > > We have data acquired at 0.8mm isotropic and would like to maintain >