Hi,
I have local instance of Galaxy and i am doing some modification in
Galaxy .So i need tool id id in local.py file . How i will get this
information in runner file (local.py).
Regards
shashi shekhar
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Please keep all replies on
Hi All,
I have local instance of Galaxy .I have system of very good configuration
.it has many cores and I want to use multiprocessor for some tool. Have
you added any tool which uses multiprocessor
in Galaxy ? Provide me tool name . in my system pbs is installed . How can i
use
On Tue, Aug 16, 2011 at 11:13 AM, shashi shekhar meshash...@gmail.com wrote:
Thanks Peter for reply
But i want to use galaxy for parallel programs like mpi and opemp .will it
support ?how can i configure for parallel programs ?
Please CC the mailing list.
Tools using openmp should be easy.
Hi
I apologize, if this problem has already been solved/discussed. I went
through the e-mail repos, but couldn't find anything.
With a little delay, I am in the process of upgrading our local Galaxy
server. Currently, I am running a few tests with the June 23, 2011
(720455407d1c) release.
Hans,
This bug was fixed in the following change set - not sure if it is currently
available in the distribution. If not, it should be within the next few weeks.
If you need it sooner, you'll have to pull from our development repo at
http://bitbucket.org/galaxy/galaxy-central/
0f15591f2acd
Roman Valls wrote:
Thanks indeed for the ~/.slurm_drmaa.conf hint Mariusz, very useful !
I wonder how this approach will work out when one runs galaxy as advised
in a production setting:
http://usegalaxy.org/production
Together with the gordon patch to run drmaa as different users:
Luobin Yang wrote:
Hi,
I am trying to scramble the pbs_python egg for my galaxy installation, when
I execute the following command:
LIBTORQUE_DIR=/usr/local/lib python scripts/scramble.py pbs_python
I got lots messages like the following:
scramble(): Egg already exists, remove to
michael burrell (TSL) wrote:
Good Morning,
I am getting a big problem with our production server when I upgrade to the
latest change set (it was quite out of date). I have attached quite a long
paster output to try and show whats going on,
Our galaxy instance no longer seems to run jobs
Hi, Nate,
Yeah, I've already solved the issue, basically used the -e parameter as you
mentioned here. I think the documentation should be corrected.
Thanks,
Luobin
On Tue, Aug 16, 2011 at 12:53 PM, Nate Coraor n...@bx.psu.edu wrote:
Luobin Yang wrote:
Hi,
I am trying to scramble the
One idea to address both of these issues is to embed the
original format in the fasta name so that it's clear whether
the coords are BED or GFF (e.g.
hg17_BED_chr1_147962192_147962580).
Or hg17_gtf_chr1_147962192_147962580 etc.
That certainly seems better than the current situation.
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